Evidence map›Paper›PMID 25285581›Full record

ArticleJournal of proteome research2014

Ubiquitinated proteins in exosomes secreted by myeloid-derived suppressor cells.

Meghan C Burke, Maria S Oei, Nathan J Edwards, Suzanne Ostrand-Rosenberg, Catherine Fenselau

Abstract read
In one paragraph

Article in Journal of proteome research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 56 citations in OpenAlex.

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  16. Extracellular vesicles with ubiquitinated adenosine AJournal of cellular and molecular medicine · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Meghan C BurkeDepartment of Chemistry and Biochemistry, University of Maryland , College Park, Maryland 20742, United States.
Maria S Oei
Nathan J Edwards
Suzanne Ostrand-Rosenberg
Catherine Fenselau
University of Maryland, College Park · USGeorgetown University · USUniversity of Maryland, Baltimore County · US

Funding

Ubiquitinated Proteins in Exosomes of Immune Suppressive Myeloid CellsR01GM021248 · NIGMS · UNIV OF MARYLAND, COLLEGE PARK · PI FENSELAU, CATHERINE C, FUSHMAN, DAVID · 1985 to 2017
$4.6M
APPLICATIONS OF MASS SPECTROMETRY IN PHARMACOLOGYR37GM021248 · NIGMS · UNIVERSITY OF MARYLAND COLLEGE PK CAMPUS · PI FENSELAU, CATHERINE C. · 1992 to 2001
$438k
LTQ Orbitrap tandem mass spectrometerS10RR023383 · NCRR · UNIV OF MARYLAND, COLLEGE PARK · PI FENSELAU, CATHERINE C. · 2007 to 2007
$394k
Howard Hughes Medical InstituteNCRR NIH HHS S10 RR023383NIGMS NIH HHS GM021248NIGMS NIH HHS R01 GM021248NIGMS NIH HHS R37 GM021248
6 · The paper itself

Abstract

We provide evidence at the molecular level that ubiquitinated proteins are present in exosomes shed by myeloid-derived suppressor cells (MDSC). Ubiquitin was selected as a post-translational modification of interest because it is known to play a determinant role in the endosomal trafficking that culminates in exosome release. Enrichment was achieved by two immunoprecipitations, first at the protein level and subsequently at the peptide level. Fifty ubiquitinated proteins were identified by tandem mass spectrometry filtering at a 5% spectral false discovery rate and using the conservative requirement that glycinylglycine-modified lysine residues were observed in tryptic peptides. Thirty five of these proteins have not previously been reported to be ubiquitinated. The ubiquitinated cohort spans a range of protein sizes and favors basic pI values and hydrophobicity. Five proteins associated with endosomal trafficking were identified as ubiquitinated, along with pro-inflammatory high mobility group protein B1 and proinflammatory histones.

Indexed as

Amino Acid SequenceAnimalsCell Line, TumorExosomesMice, Inbred BALB CMolecular Sequence DataMyeloid Progenitor CellsNeoplasm TransplantationTandem Mass SpectrometryUbiquitinated ProteinsUbiquitinated Proteinsaberrant tryptic digestionendosomal pathwayExosomesimmunoaffinity enrichmentLC−MS/MSMDSCproinflammatory againstubiquitinated proteins

Identifiers

PMID25285581
PMCPMC4261954
OpenAlexW1784936529

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.