Evidence map›Paper›PMID 25285063›Full record

ArticleGI-Edition. Proceedings2009

Comparative Generalized Logic Modeling Reveals Differential Gene Interactions during Cell Cycle Exit in

Mingzhou Joe Song, Chung-Chien Hong, Yang Zhang, Laura Buttitta, Bruce A Edgar

Abstract read
In one paragraph

Article in GI-Edition. Proceedings, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. The Krüppel-like factor Cabut has cell cycle regulatory properties similar to E2F1.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Mingzhou Joe SongDepartment of Computer Science, New Mexico State University, Las Cruces, U.S.A.
Chung-Chien HongDepartment of Computer Science, New Mexico State University, Las Cruces, U.S.A.
Yang ZhangDepartment of Computer Science, New Mexico State University, Las Cruces, U.S.A.
Laura ButtittaDivision of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, U.S.A.
Bruce A EdgarDivision of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, U.S.A.

Funding

Undergraduate Student Training in Cancer ResearchU54CA132383 · NCI · NEW MEXICO STATE UNIVERSITY LAS CRUCES · PI MICHELE Irene SHUSTER · 2007 to 2026
$21.4M
NCI NIH HHS U54 CA132383
6 · The paper itself

Abstract

A comparative interaction detection paradigm is proposed to study the complex gene regulatory networks that control cell proliferation during development. Instead of attempting to reconstruct the entire cell cycle regulatory network from temporal transcript data, differential interactions - represented by generalized logic - are detected directly from time course transcript data under two distinct conditions. This comparative approach is scale- and shift-invariant and is capable of detecting nonlinear differential interactions. Simulation studies on

Identifiers

PMID25285063
PMCPMC4181381

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.