Evidence map›Paper›PMID 25284785›Full record

ArticleCell reports2014

Functional diversification of maize RNA polymerase IV and V subtypes via alternative catalytic subunits.

Jeremy R Haag, Brent Brower-Toland, Elysia K Krieger, Lyudmila Sidorenko, Carrie D Nicora, Angela D Norbeck, Andre Irsigler, Huachun LaRue, Jan Brzeski, Karen McGinnis and 4 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 83 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Structure and Mechanism of Plant DNA Methyltransferases.Advances in experimental medicine and biology · 2022
    Article
  12. Article
  13. The effect of RNA polymerase V on 24-nt siRNA accumulation depends on DNA methylation contexts and histone modifications in rice.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  14. Article
  15. Article
  16. Biogenesis of RNA Polymerases in Yeast.Frontiers in molecular biosciences · 2021
    Review
  17. Article
  18. RNA-directed DNA Methylation.PLoS genetics · 2020
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 1 country.

Jeremy R HaagDepartment of Biology and Department of Molecular and Cellular Biochemistry, Indiana University, 915 E. Third Street, Bloomington, IN 47405, USA; Howard Hughes Medical Institute, Indiana University, Bloomington, IN 47405, USA.
Brent Brower-TolandMonsanto Company, 700 West Chesterfield Parkway, Chesterfield, MO 63017, USA.
Elysia K KriegerMonsanto Company, 700 West Chesterfield Parkway, Chesterfield, MO 63017, USA.
Lyudmila SidorenkoBIO5 Institute, Department of Plant Sciences, University of Arizona, Tucson, AZ 85719, USA.
Carrie D NicoraPacific Northwest National Laboratory, Richland, WA 99352, USA.
Angela D NorbeckPacific Northwest National Laboratory, Richland, WA 99352, USA.
Andre IrsiglerDepartment of Biological Science, Florida State University, Tallahassee, FL 32306, USA.
Huachun LaRueMonsanto Company, 700 West Chesterfield Parkway, Chesterfield, MO 63017, USA.
Jan BrzeskiBIO5 Institute, Department of Plant Sciences, University of Arizona, Tucson, AZ 85719, USA.
Karen McGinnisDepartment of Biological Science, Florida State University, Tallahassee, FL 32306, USA.
Sergey IvashutaMonsanto Company, 700 West Chesterfield Parkway, Chesterfield, MO 63017, USA.
Ljiljana Pasa-TolicPacific Northwest National Laboratory, Richland, WA 99352, USA.
Vicki L ChandlerBIO5 Institute, Department of Plant Sciences, University of Arizona, Tucson, AZ 85719, USA.
Craig S PikaardDepartment of Biology and Department of Molecular and Cellular Biochemistry, Indiana University, 915 E. Third Street, Bloomington, IN 47405, USA; Howard Hughes Medical Institute, Indiana University, Bloomington, IN 47405, USA. Electronic address: cpikaard@indiana.edu.
Monsanto (United States) · USPacific Northwest National Laboratory · USUniversity of Arizona · USFlorida State University · USHoward Hughes Medical Institute · USIndiana University Bloomington · US

Funding

WORKSHOP AND TRAINING ACTIVITIESP41RR018522 · NCRR · BATTELLE PACIFIC NORTHWEST LABORATORIES · PI SMITH, RICHARD D · 2003 to 2011
$25.1M
Roles of RNA Polymerases IV and V in siRNA-mediated gene silencingR01GM077590 · NIGMS · WASHINGTON UNIVERSITY · PI PIKAARD, CRAIG STUART · 2006 to 2020
$3.5M
Howard Hughes Medical InstituteNCRR NIH HHS P41 RR018522NCRR NIH HHS RR18522NIGMS NIH HHS GM077590NIGMS NIH HHS R01 GM077590
6 · The paper itself

Abstract

Unlike nuclear multisubunit RNA polymerases I, II, and III, whose subunit compositions are conserved throughout eukaryotes, plant RNA polymerases IV and V are nonessential, Pol II-related enzymes whose subunit compositions are still evolving. Whereas Arabidopsis Pols IV and V differ from Pol II in four or five of their 12 subunits, respectively, and differ from one another in three subunits, proteomic analyses show that maize Pols IV and V differ from Pol II in six subunits but differ from each other only in their largest subunits. Use of alternative catalytic second subunits, which are nonredundant for development and paramutation, yields at least two subtypes of Pol IV and three subtypes of Pol V in maize. Pol IV/Pol V associations with MOP1, RMR1, AGO121, Zm_DRD1/CHR127, SHH2a, and SHH2b extend parallels between paramutation in maize and the RNA-directed DNA methylation pathway in Arabidopsis.

Indexed as

ArabidopsisArabidopsis ProteinsCatalytic DomainDNA-Directed RNA PolymerasesPhylogenyPlants, Genetically ModifiedTranscription, GeneticZea maysArabidopsis ProteinsDNA-Directed RNA Polymerases

Identifiers

PMID25284785
PMCPMC4196699
OpenAlexW2170344406

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.