Evidence map›Paper›PMID 25283173›Full record

ArticleNature communications2014

Quantification of plasma HIV RNA using chemically engineered peptide nucleic acids.

Chao Zhao, Travis Hoppe, Mohan Kumar Haleyur Giri Setty, Danielle Murray, Tae-Wook Chun, Indira Hewlett, Daniel H Appella

Open access · bronzeAbstract read
In one paragraph

Article in Nature communications, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. A Lucifer-Based Environment-Sensitive Fluorescent PNA Probe for Imaging Poly(A) RNAs.Chembiochem : a European journal of chemical biology · 2018
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Chao ZhaoLaboratory of Bioorganic Chemistry, NIDDK, NIH, DHHS, 9000 Rockville Pike, Bethesda, Maryland 20892, USA.
Travis HoppeLaboratory of Biochemistry and Genetics, NIDDK, NIH, DHHS, 9000 Rockville Pike, Bethesda, Maryland 20892, USA.
Mohan Kumar Haleyur Giri SettyLaboratory of Molecular Virology, Center for Biologics Evaluation and Research, FDA, 9000 Rockville Pike, Bethesda, Maryland 20892, USA.
Danielle MurrayLaboratory of Immunoregulation, NIAID, NIH, DHHS, 9000 Rockville Pike, Bethesda, Maryland 20892, USA.
Tae-Wook ChunLaboratory of Immunoregulation, NIAID, NIH, DHHS, 9000 Rockville Pike, Bethesda, Maryland 20892, USA.
Indira HewlettLaboratory of Molecular Virology, Center for Biologics Evaluation and Research, FDA, 9000 Rockville Pike, Bethesda, Maryland 20892, USA.
Daniel H AppellaLaboratory of Bioorganic Chemistry, NIDDK, NIH, DHHS, 9000 Rockville Pike, Bethesda, Maryland 20892, USA.
United States Department of Health and Human Services · USCenter for Biologics Evaluation and Research · US

Funding

Role of Viral Reservoirs in the Pathogenesis of HIV DiseaseZIAAI000851 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI CHUN, TAE-WOOK · 2009 to 2025
$29.3M
Chemically Modified Peptide Nucleic AcidsZIADK031143 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI APPELLA, DANIEL H · 2009 to 2025
$13.9M
Intramural NIH HHS ZIA DK031143
6 · The paper itself

Abstract

The remarkable stability of peptide nucleic acids (PNAs) towards enzymatic degradation makes this class of molecules ideal to develop as part of a diagnostic device. Here we report the development of chemically engineered PNAs for the quantitative detection of HIV RNA at clinically relevant levels that are competitive with current PCR-based assays. Using a sandwich hybridization approach, chemical groups were systematically introduced into a surface PNA probe and a reporter PNA probe to achieve quantitative detection for HIV RNA as low as 20 copies per millilitre of plasma. For the surface PNA probe, four cyclopentane groups were incorporated to promote stronger binding to the target HIV RNA compared with PNA without the cyclopentanes. For the reporter PNA probe, 25 biotin groups were attached to promote strong signal amplification after binding to the target HIV RNA. These general approaches to engineer PNA probes may be used to detect other RNA target sequences.

Indexed as

BiotinChemistry Techniques, AnalyticalCyclopentanesGene Products, gagGenes, ReporterHIV InfectionsHumansNucleic Acid HybridizationPeptide Nucleic AcidsRNA, ViralTemperatureViral LoadBiotinCyclopentanesGene Products, gagPeptide Nucleic AcidsRNA, Viral

Identifiers

PMID25283173
PMCPMC4187110
OpenAlexW2002647304

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.