Evidence map›Paper›PMID 25282102›Full record

ArticleNature genetics2014

Recombination drives genome evolution in outbreak-related Legionella pneumophila isolates.

Leonor Sánchez-Busó, Iñaki Comas, Guillermo Jorques, Fernando González-Candelas

Abstract read
PubMed Publisher
In one paragraph

Article in Nature genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
11.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 87 citations in OpenAlex.

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  17. Quantifying the transmission of antimicrobial resistance at the human and livestock interface with genomics.Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases · 2020
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  19. An Evolutionary Arms Race BetweenFrontiers in microbiology · 2020
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  20. Diverse conjugative elements silence natural transformation inProceedings of the National Academy of Sciences of the United States of America · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Leonor Sánchez-Busó1] Infection and Public Health Joint Unit, FISABIO (Fundación para el Fomento de la Investigación Biomédica y Sanitaria de la Comunidad Valenciana), University of Valencia-Cavanilles Institute for Biodiversity and Evolutionary Biology, Valencia, Spain. [2] CIBER (Centro de Investigación Biomédica en Red) in Epidemiology and Public Health, Valencia, Spain.
Iñaki Comas1] Infection and Public Health Joint Unit, FISABIO (Fundación para el Fomento de la Investigación Biomédica y Sanitaria de la Comunidad Valenciana), University of Valencia-Cavanilles Institute for Biodiversity and Evolutionary Biology, Valencia, Spain. [2] CIBER (Centro de Investigación Biomédica en Red) in Epidemiology and Public Health, Valencia, Spain.
Guillermo JorquesPublic Health Centre, Alcoy, Spain.
Fernando González-Candelas1] Infection and Public Health Joint Unit, FISABIO (Fundación para el Fomento de la Investigación Biomédica y Sanitaria de la Comunidad Valenciana), University of Valencia-Cavanilles Institute for Biodiversity and Evolutionary Biology, Valencia, Spain. [2] CIBER (Centro de Investigación Biomédica en Red) in Epidemiology and Public Health, Valencia, Spain.ORCID 0000000208795798
Universitat de València · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Legionella pneumophila is a strictly environmental pathogen and the etiological agent of legionellosis. It is known that non-vertical processes have a major role in the short-term evolution of pathogens, but little is known about the relevance of these and other processes in environmental bacteria. We report the whole-genome sequencing of 69 L. pneumophila strains linked to recurrent outbreaks in a single location (Alcoy, Spain) over 11 years. We found some examples where the genome sequences of isolates of the same sequence type and outbreak did not cluster together and were more closely related to sequences from different outbreaks. Our analyses identify 16 recombination events responsible for almost 98% of the SNPs detected in the core genome and an apparent acceleration in the evolutionary rate. These results have profound implications for the understanding of microbial populations and for public health interventions in Legionella outbreak investigations.

Indexed as

Evolution, MolecularBase SequenceBayes TheoremDisease OutbreaksGenome, BacterialGenomicsHumansLegionella pneumophilaLegionnaires' DiseaseLikelihood FunctionsModels, GeneticMolecular Sequence DataPhylogenyPolymorphism, Single NucleotideRecombination, GeneticSequence Analysis, DNA

Identifiers

PMID25282102
OpenAlexW2056359596

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.