Evidence map›Paper›PMID 25281006›Full record

ArticleDevelopmental biology2014

Hcfc1b, a zebrafish ortholog of HCFC1, regulates craniofacial development by modulating mmachc expression.

Anita M Quintana, Elizabeth A Geiger, Nate Achilly, David S Rosenblatt, Kenneth N Maclean, Sally P Stabler, Kristin B Artinger, Bruce Appel, Tamim H Shaikh

Open access · greenAbstract read
In one paragraph

Article in Developmental biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Review
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  4. Overexpression ofAmerican journal of undergraduate research · 2023
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  7. Abnormal chondrocyte intercalation in a zebrafish model ofbioRxiv : the preprint server for biology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Anita M QuintanaDepartment of Pediatrics, University of Colorado School of Medicine, Aurora, CO 80045, USA. Electronic address: anita.quintana@ucdenver.edu.
Elizabeth A GeigerDepartment of Pediatrics, University of Colorado School of Medicine, Aurora, CO 80045, USA. Electronic address: elizabeth.geiger@ucdenver.edu.
Nate AchillyGenetics and Molecular Biology Branch, National Human Genome Research Institute, National Institutes of Health, Bethesda, MD 20892, USA. Electronic address: nate.achilly@nih.gov.
David S RosenblattDepartment of Human Genetics, McGill University, Montreal, Quebec, Canada H3A 1B1. Electronic address: david.rosenblatt@mcgill.ca.
Kenneth N MacleanDepartment of Pediatrics, University of Colorado School of Medicine, Aurora, CO 80045, USA; Section of Genetics, University of Colorado, School of Medicine, Aurora, CO 80045, USA. Electronic address: ken.maclean@ucdenver.edu.
Sally P StablerDepartment of Medicine, University of Colorado School of Medicine, CO 80045, USA. Electronic address: sally.stabler@ucdenver.edu.
Kristin B ArtingerDepartment of Craniofacial Biology, School of Dental Medicine, University of Colorado, CO 80045, USA. Electronic address: kristin.artinger@ucdenver.edu.
Bruce AppelDepartment of Pediatrics, University of Colorado School of Medicine, Aurora, CO 80045, USA. Electronic address: bruce.appel@ucdenver.edu.
Tamim H ShaikhDepartment of Pediatrics, University of Colorado School of Medicine, Aurora, CO 80045, USA; Section of Genetics, University of Colorado, School of Medicine, Aurora, CO 80045, USA. Electronic address: tamim.shaikh@ucdenver.edu.
University of Colorado Denver · USMcGill University · CANational Institutes of Health · US

Funding

Development of Psychopathology, Psychobiology, & BehaviorT32MH015442 · NIMH · UNIVERSITY OF COLORADO DENVER · PI JASON R TREGELLAS · 1985 to 2026
$10.2M
ZEBRAFISH TRANSGENIC CORE - ROCKY MOUNTAIN NEUROLOGICAL DISORDERS CORE CENTERP30NS048154 · NINDS · UNIVERSITY OF COLORADO DENVER · PI RIBERA, ANGELES BADELL · 2004 to 2020
$10.1M
Copy Number Alterations in Genomic DisordersR01GM081519 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI SHAIKH, TAMIM H · 2007 to 2010
$2.4M
Genetic Analysis of Peripheral Nerve DevelopmentR01NS062717 · NINDS · UNIVERSITY OF COLORADO DENVER · PI APPEL, BRUCE H · 2009 to 2013
$1.6M
NIGMS NIH HHS GM081519/S1NIGMS NIH HHS R01 GM081519NIMH NIH HHS T32 MH015442NIMH NIH HHS T32MH015442NINDS NIH HHS NS062717NINDS NIH HHS P30 NS048154NINDS NIH HHS P30NS048154NINDS NIH HHS R01 NS062717
6 · The paper itself

Abstract

Mutations in HCFC1 (MIM300019), have been recently associated with cblX (MIM309541), an X-linked, recessive disorder characterized by multiple congenital anomalies including craniofacial abnormalities. HCFC1 is a transcriptional co-regulator that modulates the expression of numerous downstream target genes including MMACHC, but it is not clear how these HCFC1 targets play a role in the clinical manifestations of cblX. To begin to elucidate the mechanism by which HCFC1 modulates disease phenotypes, we have carried out loss of function analyses in the developing zebrafish. Of the two HCFC1 orthologs in zebrafish, hcfc1a and hcfc1b, the loss of hcfc1b specifically results in defects in craniofacial development. Subsequent analysis revealed that hcfc1b regulates cranial neural crest cell differentiation and proliferation within the posterior pharyngeal arches. Further, the hcfc1b-mediated craniofacial abnormalities were rescued by expression of human MMACHC, a downstream target of HCFC1 that is aberrantly expressed in cblX. Furthermore, we tested distinct human HCFC1 mutations for their role in craniofacial development and demonstrated variable effects on MMACHC expression in humans and craniofacial development in zebrafish. Notably, several individuals with mutations in either HCFC1 or MMACHC have been reported to have mild to moderate facial dysmorphia. Thus, our data demonstrates that HCFC1 plays a role in craniofacial development, which is in part mediated through the regulation of MMACHC expression.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsBody PatterningBranchial RegionCarrier ProteinsCell DifferentiationCell MovementChondrocytesCraniofacial AbnormalitiesGene Knockdown TechniquesGreen Fluorescent ProteinsHost Cell Factor C1HumansMice, TransgenicMutationNeural CrestCarrier ProteinsGreen Fluorescent Proteinshcfc1a protein, zebrafishHCFC1 protein, humanHost Cell Factor C1MMACHC protein, humanMMACHC protein, zebrafishOxidoreductasesVitamin B 12Zebrafish ProteinsCobalaminCraniofacial defectsFacial dysmorphiaHCFC1MMACHC

Identifiers

PMID25281006
PMCPMC4391465
OpenAlexW2003235922

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.