Evidence map›Paper›PMID 25280907›Full record

ReviewNeuroscience and biobehavioral reviews2015

The opportunities and challenges of large-scale molecular approaches to songbird neurobiology.

C V Mello, D F Clayton

Abstract readReview
In one paragraph

Review in Neuroscience and biobehavioral reviews, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Article
  4. Review
  5. Article
  6. Bidirectional manipulation of mTOR signaling disrupts socially mediated vocal learning in juvenile songbirds.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  7. Article
  8. Article
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

C V MelloDepartment of Behavioral Neuroscience, Oregon Health and Science University, 3181 SW Sam Jackson Park Road L470, Portland, OR 97239-3098, USA. Electronic address: melloc@ohsu.edu.
D F ClaytonDivision of Biological and Experimental Psychology, School of Biological and Chemical Sciences, Queen Mary University of London, Mile End Road, London E1 4NS, UK.

Funding

A Gene Expression Brain Atlas of the Zebra Finch.R24GM092842 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI MELLO, CLAUDIO V · 2010 to 2013
$1.5M
NIGMS NIH HHS R24 GM092842NIGMS NIH HHS R24-GM092842
6 · The paper itself

Abstract

High-throughput methods for analyzing genome structure and function are having a large impact in songbird neurobiology. Methods include genome sequencing and annotation, comparative genomics, DNA microarrays and transcriptomics, and the development of a brain atlas of gene expression. Key emerging findings include the identification of complex transcriptional programs active during singing, the robust brain expression of non-coding RNAs, evidence of profound variations in gene expression across brain regions, and the identification of molecular specializations within song production and learning circuits. Current challenges include the statistical analysis of large datasets, effective genome curations, the efficient localization of gene expression changes to specific neuronal circuits and cells, and the dissection of behavioral and environmental factors that influence brain gene expression. The field requires efficient methods for comparisons with organisms like chicken, which offer important anatomical, functional and behavioral contrasts. As sequencing costs plummet, opportunities emerge for comparative approaches that may help reveal evolutionary transitions contributing to vocal learning, social behavior and other properties that make songbirds such compelling research subjects.

Indexed as

Genetic TechniquesAnimalsBrainChickensGene ExpressionGenomicsHigh-Throughput Nucleotide SequencingSongbirdsVocalization, AnimalAvian modelsBirdsongGene expressionGenomicsHigh-throughputMicroarraysNetworksSongbirdsTranscriptomicsVocal learningZebra finch

Identifiers

PMID25280907
PMCPMC4355393

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.