Evidence map›Paper›PMID 25280367›Full record

ArticleBiochemistry2014

Polyglutamine amyloid core boundaries and flanking domain dynamics in huntingtin fragment fibrils determined by solid-state nuclear magnetic resonance.

Cody L Hoop, Hsiang-Kai Lin, Karunakar Kar, Zhipeng Hou, Michelle A Poirier, Ronald Wetzel, Patrick C A van der Wel

Abstract read
In one paragraph

Article in Biochemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 87 citations in OpenAlex.

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  11. 3D-Printable centrifugal devices for biomolecular solid state NMR rotors.Journal of magnetic resonance (San Diego, Calif. : 1997) · 2023
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  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Cody L HoopDepartment of Structural Biology, University of Pittsburgh School of Medicine , Biomedical Science Tower 3, 3501 Fifth Avenue, Pittsburgh, Pennsylvania 15260, United States.
Hsiang-Kai Lin
Karunakar Kar
Zhipeng Hou
Michelle A Poirier
Ronald Wetzel
Patrick C A van der Wel
University of Pittsburgh · USJohns Hopkins University · US

Funding

UNIVERSITY OF PITTSBURGH CLINICAL AND TRANSLATIONAL SCIENCE INSTITUTE: BPCAUL1RR024153 · NCRR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI REIS, STEVEN E · 2006 to 2011
$73.9M
Structures and Properties of Polyglutamine Proteins and Their AggregatesR01AG019322 · NIA · UNIVERSITY OF TENNESSEE KNOXVILLE · PI WETZEL, RONALD B · 2001 to 2014
$4.6M
Training in the Molecular Biophysics and Structural BiologyT32GM088119 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI HINCK, ANDREW P · 2011 to 2020
$1.6M
Mechanisms of amyloid nucleationR01GM099718 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI WETZEL, RONALD B · 2012 to 2015
$1.1M
NCRR NIH HHS UL1 RR024153NIA NIH HHS R01 AG019322NIGMS NIH HHS R01 GM099718NIGMS NIH HHS T32 GM088119
6 · The paper itself

Abstract

In Huntington's disease, expansion of a polyglutamine (polyQ) domain in the huntingtin (htt) protein leads to misfolding and aggregation. There is much interest in the molecular features that distinguish monomeric, oligomeric, and fibrillar species that populate the aggregation pathway and likely differ in cytotoxicity. The mechanism and rate of aggregation are greatly affected by the domains flanking the polyQ segment within exon 1 of htt. A "protective" C-terminal proline-rich flanking domain inhibits aggregation by inducing polyproline II structure (PPII) within an extended portion of polyQ. The N-terminal flanking segment (htt(NT)) adopts an α-helical structure as it drives aggregation, helps stabilize oligomers and fibrils, and is seemingly integral to their supramolecular assembly. Via solid-state nuclear magnetic resonance (ssNMR), we probe how, in the mature fibrils, the htt flanking domains impact the polyQ domain and in particular the localization of the β-structured amyloid core. Using residue-specific and uniformly labeled samples, we find that the amyloid core occupies most of the polyQ domain but ends just prior to the prolines. We probe the structural and dynamical features of the remarkably abrupt β-sheet to PPII transition and discuss the potential connections to certain htt-binding proteins. We also examine the htt(NT) α-helix outside the polyQ amyloid core. Despite its presumed structural and demonstrated stabilizing roles in the fibrils, quantitative ssNMR measurements of residue-specific dynamics show that it undergoes distinct solvent-coupled motion. This dynamical feature seems reminiscent of molten-globule-like α-helix-rich features attributed to the nonfibrillar oligomeric species of various amyloidogenic proteins.

Indexed as

AmyloidExonsHumansHuntingtin ProteinNerve Tissue ProteinsNuclear Magnetic Resonance, BiomolecularPeptide FragmentsPeptidesProtein Structure, SecondaryAmyloidHTT protein, humanHuntingtin ProteinNerve Tissue ProteinsPeptide FragmentsPeptidespolyglutamine

Identifiers

PMID25280367
PMCPMC4211650
OpenAlexW2318414036

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.