Evidence map›Paper›PMID 25280117›Full record

ArticleCytometry. Part B, Clinical cytometry2015

Computerized delineation of nuclei in liquid-based pap smears stained with immunohistochemical biomarkers.

Yi Qin, Ann E Walts, Beatrice S Knudsen, Arkadiusz Gertych

Open access · greenAbstract read
In one paragraph

Article in Cytometry. Part B, Clinical cytometry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.6field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Yi QinBioimage Informatics Laboratory, Department of Surgery, Cedars-Sinai Medical Center, Los Angeles, California.
Ann E Walts
Beatrice S Knudsen
Arkadiusz Gertych
Cedars-Sinai Medical Center · US

Funding

In vivo effects of sulforaphane supplementation on normal human prostateR01CA131255 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI KNUDSEN, BEATRICE S, LIN, DANIEL W. · 2009 to 2013
$1.8M
High-Content Image Analysis of Global DNA Methylation Patterns for Drug ScreeningR21CA143618 · NCI · CEDARS-SINAI MEDICAL CENTER · PI GERTYCH, ARKADIUSZ · 2010 to 2011
$379k
NCI NIH HHS 5R01CA131255-05NCI NIH HHS 5R21CA143618-02NCI NIH HHS R01 CA131255NCI NIH HHS R21 CA143618
6 · The paper itself

Abstract

backgroundInfection with high-risk human papillomaviruses (hrHPVs) is a frequent cause of cervical intraepithelial neoplasias and carcinomas. The recently developed p16/Ki67 dual stain of cytologic preparations possesses superior specificity over current HPV testing for detecting moderate- and high-grade dysplasias and can potentially be applied in routine cytology screening. Image analysis can possibly improve the efficiency of evaluating Papanicolaou (Pap) smears, if dual-stained nuclei are accurately localized and reliably distinguished from the background of other cells.

methodsHere, we describe a technique comprising color deconvolution, radial symmetry detector, and a superpixel-based segmentation for computerized delineation of nuclei in Pap smears stained with p16/Ki67.

resultsThe performance of the method was determined by the precision and recall in 99 images (n = 19,323 cells) and reached 0.952 and 0.958, respectively. The accuracy of delineation, assessed by the Jaccard index (n = 1,080 cells), was 0.794. In single cells the precision and recall was higher than in clumps (P = 0.005).

conclusionsIn summary, the new technique delineates large and small nuclei irrespectively of coloration with a significantly better performance than a method solely involving the radial symmetry detector. Therefore, it is suited to automatically define nuclear areas for quantification of nuclear biomarkers in smears.

Indexed as

BiomarkersCell NucleusCytodiagnosisDiagnosis, Computer-AssistedFemaleHumansVaginal SmearsBiomarkersbiomarkersimage analysisimmunohistochemistrynuclei segmentationp16/Ki67Pap test

Identifiers

PMID25280117
PMCPMC4188512
OpenAlexW2007422211

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.