Evidence map›Paper›PMID 25280009›Full record

ArticlePloS one2014

Sequence and annotation of the apicoplast genome of the human pathogen Babesia microti.

Aprajita Garg, Anna Stein, William Zhao, Ankit Dwivedi, Roger Frutos, Emmanuel Cornillot, Choukri Ben Mamoun

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.6field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 43 citations in OpenAlex.

  1. Review
  2. Article
  3. Transfection ofBio-protocol · 2024
    Article
  4. Article
  5. Apicoplast-Resident Processes: Exploiting the Chink in the Armour ofAdvances in pharmacological and pharmaceutical sciences · 2024
    Review
  6. Transfusion-transmittedJournal of clinical microbiology · 2023
    Review
  7. Microbiology spectrum · 2023
    Article
  8. Review
  9. Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Aprajita GargDepartment of Internal Medicine, Section of Infectious Diseases, Yale School of Medicine, New Haven, Connecticut, United States of America.
Anna SteinDepartment of Internal Medicine, Section of Infectious Diseases, Yale School of Medicine, New Haven, Connecticut, United States of America.
William ZhaoDepartment of Internal Medicine, Section of Infectious Diseases, Yale School of Medicine, New Haven, Connecticut, United States of America.
Ankit DwivediCentre d'étude d'agents Pathogènes et Biotechnologies pour la Santé - UMR 5236, Institut de Biologie Computationnelle, Montpellier, France.
Roger FrutosCentre d'étude d'agents Pathogènes et Biotechnologies pour la Santé - UMR 5236, Institut de Biologie Computationnelle, Montpellier, France; CIRAD, UMR 17, Cirad-Ird, TA-A17/G, Campus International de Baillarguet, Montpellier, France.
Emmanuel CornillotCentre d'étude d'agents Pathogènes et Biotechnologies pour la Santé - UMR 5236, Institut de Biologie Computationnelle, Montpellier, France.
Choukri Ben MamounDepartment of Internal Medicine, Section of Infectious Diseases, Yale School of Medicine, New Haven, Connecticut, United States of America.
Yale University · USCentre d’études d’agents Pathogènes et Biotechnologies Pour la Santé · FR

Funding

Function and Inhibition of Plasmodium Lipid DecarboxylasesR01AI097218 · NIAID · YALE UNIVERSITY · PI BEN MAMOUN, CHOUKRI · 2012 to 2016
$2.0M
NIAID NIH HHS AI097218NIAID NIH HHS R01 AI097218
6 · The paper itself

Abstract

The apicomplexan intraerythrocytic parasite Babesia microti is an emerging human pathogen and the primary cause of human babesiosis, a malaria-like illness endemic in the United States. The pathogen is transmitted to humans by the tick vector, Ixodes scapularis, and by transfusion of blood from asymptomatic B. microti-infected donors. Whereas the nuclear and mitochondrial genomes of this parasite have been sequenced, assembled and annotated, its apicoplast genome remained incomplete, mainly due to its low representation and high A+T content. Here we report the complete sequence and annotation of the apicoplast genome of the B. microti R1 isolate. The genome consists of a 28.7 kb circular molecule encoding primarily functions important for maintenance of the apicoplast DNA, transcription, translation and maturation of organellar proteins. Genome analysis and annotation revealed a unique gene structure and organization of the B. microti apicoplast genome and suggest that all metabolic and non-housekeeping functions in this organelle are nuclear-encoded. B. microti apicoplast functions are significantly different from those of the host, suggesting that they might be useful as targets for development of potent and safe therapies for the treatment of human babesiosis.

Indexed as

Genome, PlastidMolecular Sequence AnnotationApicoplastsBabesia microtiBabesiosisGene OrderHumansMolecular Sequence DataMultigene FamilyPhylogenySequence Analysis, DNA

Identifiers

PMID25280009
PMCPMC4184790
OpenAlexW2049323464

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.