Evidence map›Paper›PMID 25279756›Full record

ArticlePloS one2014

Network analysis identifies SOD2 mRNA as a potential biomarker for Parkinson's disease.

Jose A Santiago, Clemens R Scherzer, Judith A Potashkin

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Review
  3. Insights into Manganese Superoxide Dismutase and Human Diseases.International journal of molecular sciences · 2022
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Parkinson's disease between internal medicine and neurology.Journal of neural transmission (Vienna, Austria : 1996) · 2016
    Review
  17. Article
  18. Metaanalysis of flawed expression profiling data leading to erroneous Parkinson's biomarker identification.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  19. Network-based metaanalysis identifies HNF4A and PTBP1 as longitudinally dynamic biomarkers for Parkinson's disease.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Jose A SantiagoThe Cellular and Molecular Pharmacology Department, The Chicago Medical School, Rosalind Franklin University of Medicine and Science, North Chicago, Illinois, United States of America.
Clemens R ScherzerThe Neurogenomics Laboratory, Harvard Medical School and Brigham and Women's Hospital, Cambridge, Massachusetts, United States of America.
Judith A PotashkinThe Cellular and Molecular Pharmacology Department, The Chicago Medical School, Rosalind Franklin University of Medicine and Science, North Chicago, Illinois, United States of America.
Rosalind Franklin University of Medicine and Science · USHarvard University · US

Funding

THE ROLE OF ADVANCED CAA IN ALZHEIMER'S DEMENTIAP50AG005134 · NIA · MASSACHUSETTS GENERAL HOSPITAL · PI GOMEZ-ISLA, TERESA · 1985 to 2018
$42.1M
Creatine Safety, Tolerability, and Efficacy in Huntington's Disease: CREST-EU01AT000613 · NCCIH · MASSACHUSETTS GENERAL HOSPITAL · PI HERSCH, STEVEN M · 2007 to 2015
$12.9M
Neuroimaging Biomarkers for disease-modyfying therapies in Hintington's diseaseP01NS058793 · NINDS · MASSACHUSETTS GENERAL HOSPITAL · PI HERSCH, STEVEN M · 2008 to 2012
$6.6M
Biomarkers for early intervention in Parkinson diseaseU01NS082157 · NINDS · BRIGHAM AND WOMEN'S HOSPITAL · PI SCHERZER, CLEMENS R · 2012 to 2016
$2.5M
Genome-wide analysis of tau neurotoxicityR01AG044113 · NIA · BRIGHAM AND WOMEN'S HOSPITAL · PI FEANY, MEL B · 2012 to 2016
$2.0M
Risk Marker for Parkinson's Disease: Enabling Novel TherapiesR01NS064155 · NINDS · BRIGHAM AND WOMEN'S HOSPITAL · PI SCHERZER, CLEMENS R · 2008 to 2011
$1.7M
A Next Generation of Biomarkers for Incipient Huntington DiseaseU01NS082080 · NINDS · BRIGHAM AND WOMEN'S HOSPITAL · PI SCHERZER, CLEMENS R · 2013 to 2015
$1.5M
NCCIH NIH HHS U01 AT000613NIA NIH HHS P50 AG005134NIA NIH HHS R01 AG044113NINDS NIH HHS P01 NS058793NINDS NIH HHS R01 NS064155NINDS NIH HHS U01 NS082080NINDS NIH HHS U01 NS082157
6 · The paper itself

Abstract

Increasing evidence indicates that Parkinson's disease (PD) and type 2 diabetes (T2DM) share dysregulated molecular networks. We identified 84 genes shared between PD and T2DM from curated disease-gene databases. Nitric oxide biosynthesis, lipid and carbohydrate metabolism, insulin secretion and inflammation were identified as common dysregulated pathways. A network prioritization approach was implemented to rank genes according to their distance to seed genes and their involvement in common biological pathways. Quantitative polymerase chain reaction assays revealed that a highly ranked gene, superoxide dismutase 2 (SOD2), is upregulated in PD patients compared to healthy controls in 192 whole blood samples from two independent clinical trials, the Harvard Biomarker Study (HBS) and the Diagnostic and Prognostic Biomarkers in Parkinson's disease (PROBE). The results from this study reinforce the idea that shared molecular networks between PD and T2DM provides an additional source of biologically meaningful biomarkers. Evaluation of this biomarker in de novo PD patients and in a larger prospective longitudinal study is warranted.

Indexed as

RNA, MessengerUp-RegulationAgedAlgorithmsBiomarkersDatabases, GeneticDiabetes Mellitus, Type 2Gene Regulatory NetworksHumansMaleMiddle AgedParkinson DiseaseSuperoxide DismutaseSuperoxide Dismutase 2BiomarkersRNA, MessengerSuperoxide DismutaseSuperoxide Dismutase 2

Identifiers

PMID25279756
PMCPMC4184821
OpenAlexW2132693527

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.