ArticleJournal of biomedical semantics2014
The Porifera Ontology (PORO): enhancing sponge systematics with an anatomy ontology.
Article in Journal of biomedical semantics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.
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Who cites it
7 citing papers in PubMed.
- Bioconversion of carotenoids into high-value crocins using a marine sponge carotenoid cleavage dioxygenase.The New phytologist · 2026Article
- On the origin of the functional versatility of macrophages.Frontiers in physiology · 2023Article
- Towards semantic interoperability: finding and repairing hidden contradictions in biomedical ontologies.BMC medical informatics and decision making · 2020Article
- Bioinspired Mechano-Sensitive Macroporous Ceramic Sponge for Logical Drug and Cell Delivery.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2017Article
- Evolution of Myeloid Cells.Microbiology spectrum · 2016Review
- TaxaGloss - A Glossary and Translation Tool for Biodiversity Studies.Biodiversity data journal · 2016Article
- Article
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Authors and funding
7 authors.
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Abstract
backgroundPorifera (sponges) are ancient basal metazoans that lack organs. They provide insight into key evolutionary transitions, such as the emergence of multicellularity and the nervous system. In addition, their ability to synthesize unusual compounds offers potential biotechnical applications. However, much of the knowledge of these organisms has not previously been codified in a machine-readable way using modern web standards.
resultsThe Porifera Ontology is intended as a standardized coding system for sponge anatomical features currently used in systematics. The ontology is available from http://purl.obolibrary.org/obo/poro.owl, or from the project homepage http://porifera-ontology.googlecode.com/. The version referred to in this manuscript is permanently available from http://purl.obolibrary.org/obo/poro/releases/2014-03-06/.
conclusionsBy standardizing character representations, we hope to facilitate more rapid description and identification of sponge taxa, to allow integration with other evolutionary database systems, and to perform character mapping across the major clades of sponges to better understand the evolution of morphological features. Future applications of the ontology will focus on creating (1) ontology-based species descriptions; (2) taxonomic keys that use the nested terms of the ontology to more quickly facilitate species identifications; and (3) methods to map anatomical characters onto molecular phylogenies of sponges. In addition to modern taxa, the ontology is being extended to include features of fossil taxa.
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