Evidence map›Paper›PMID 25276091›Full record

ReviewPharmacogenomics and personalized medicine2014

Developing genomic knowledge bases and databases to support clinical management: current perspectives.

Vojtech Huser, Murat Sincan, James J Cimino

Abstract readReview
In one paragraph

Review in Pharmacogenomics and personalized medicine, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. ARBoR: an identity and security solution for clinical reporting.Journal of the American Medical Informatics Association : JAMIA · 2019
    Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Vojtech HuserLaboratory for Informatics Development, National Institutes of Health Clinical Center, Bethesda, MD, USA.
Murat SincanUndiagnosed Diseases Program, National Institutes of Health, MD, USA ; Office of the Clinical Director, National Human Genome Research Institute, National Institutes of Health, MD, USA.
James J CiminoLaboratory for Informatics Development, National Institutes of Health Clinical Center, Bethesda, MD, USA ; National Library of Medicine, National Institutes of Health, MD, USA.

Funding

Improving the Clinical Research Informatics and Clinical Bioinformatics Infrastructure at the NIH Clinical CenterZIHCL000907 · CLC · CLINICAL CENTER · PI HUSER, VOJTECH · 2015 to 2015
$0k
6 · The paper itself

Abstract

Personalized medicine, the ability to tailor diagnostic and treatment decisions for individual patients, is seen as the evolution of modern medicine. We characterize here the informatics resources available today or envisioned in the near future that can support clinical interpretation of genomic test results. We assume a clinical sequencing scenario (germline whole-exome sequencing) in which a clinical specialist, such as an endocrinologist, needs to tailor patient management decisions within his or her specialty (targeted findings) but relies on a genetic counselor to interpret off-target incidental findings. We characterize the genomic input data and list various types of knowledge bases that provide genomic knowledge for generating clinical decision support. We highlight the need for patient-level databases with detailed lifelong phenotype content in addition to genotype data and provide a list of recommendations for personalized medicine knowledge bases and databases. We conclude that no single knowledge base can currently support all aspects of personalized recommendations and that consolidation of several current resources into larger, more dynamic and collaborative knowledge bases may offer a future path forward.

Indexed as

clinical decision supportclinical informaticsdatabasesknowledge basespersonalized medicine

Identifiers

PMID25276091
PMCPMC4175027

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.