Evidence map›Paper›PMID 25275523›Full record

ArticlePLoS computational biology2014

A reappraisal of how to build modular, reusable models of biological systems.

Maxwell L Neal, Michael T Cooling, Lucian P Smith, Christopher T Thompson, Herbert M Sauro, Brian E Carlson, Daniel L Cook, John H Gennari

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in PLoS computational biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Review
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  6. Review
  7. Article
  8. Analysing and simulating energy-based models in biology using BondGraphTools.The European physical journal. E, Soft matter · 2021
    Article
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  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Maxwell L NealDepartment of Bioengineering, University of Washington, Seattle, Washington, United States of America.
Michael T CoolingAuckland Bioengineering Institute, University of Auckland, Auckland, New Zealand.
Lucian P SmithDepartment of Bioengineering, University of Washington, Seattle, Washington, United States of America.
Christopher T ThompsonDepartment of Physiology, Medical College of Wisconsin, Milwaukee, Wisconsin, United States of America.
Herbert M SauroDepartment of Bioengineering, University of Washington, Seattle, Washington, United States of America.
Brian E CarlsonDepartment of Molecular and Integrative Physiology, University of Michigan, Ann Arbor, Michigan, United States of America.
Daniel L CookDepartment of Physiology and Biophysics, University of Washington, Seattle, Washington, United States of America.
John H GennariDepartment of Biomedical Informatics and Medical Education, University of Washington, Seattle, Washington, United States of America.

Funding

University of Washington Biomedical Informatics and Data Science Research Training ProgramT15LM007442 · NLM · UNIVERSITY OF WASHINGTON · PI JOHN H. GENNARI, Andrea L. Hartzler · 2002 to 2026
$19.6M
The Virtual Physiological Rat ProjectP50GM094503 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI BEARD, DANIEL A · 2011 to 2015
$11.6M
Continued Development and Maintenance of the Systems Biology WorkbenchR01GM081070 · NIGMS · UNIVERSITY OF WASHINGTON · PI SAURO, HERBERT M. · 2007 to 2014
$1.7M
A synthetic biology library for the Semantic WebR42HG006737 · NHGRI · CLARK AND PARSIA, LLC · PI GENNARI, JOHN H., SIRIN, EVREN · 2011 to 2012
$848k
NHGRI NIH HHS R42 HG006737NHGRI NIH HHS R42-HG006737-03NIGMS NIH HHS P50 GM094503NIGMS NIH HHS P50-GM094503-03NIGMS NIH HHS R01 GM081070NIGMS NIH HHS R01-GM081070-06NLM NIH HHS T15 LM007442NLM NIH HHS T15-LM007442-06
6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Indexed as

Models, BiologicalSoftwareSystems BiologyMetabolic Networks and Pathways

Identifiers

PMID25275523
PMCPMC4183381

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.