Evidence map›Paper›PMID 25274629›Full record

ArticleThe Journal of biological chemistry2014

Biochemical and biophysical characterization of the selenium-binding and reducing site in Arabidopsis thaliana homologue to mammals selenium-binding protein 1.

Florie Schild, Sylvie Kieffer-Jaquinod, Andrés Palencia, David Cobessi, Géraldine Sarret, Chloé Zubieta, Agnès Jourdain, Renaud Dumas, Vincent Forge, Denis Testemale and 2 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 37 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Overexpression of Wheat Selenium-Binding Protein GeneInternational journal of molecular sciences · 2024
    Article
  5. Review
  6. Evolutionary Aspects of Selenium Binding Protein (SBP).Journal of molecular evolution · 2023
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Metabolic Response of the YeastInternational journal of molecular sciences · 2020
    Article
  12. Article
  13. Article
  14. Determination of Proteinaceous Selenocysteine in Selenized Yeast.International journal of molecular sciences · 2018
    Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 2 countries.

Florie SchildInstitut de Recherches en Technologies et Sciences pour le Vivant, Laboratoire de Physiologie Cellulaire et Végétale, CEA, Université Grenoble Alpes, CNRS UMR5168, INRA USC1359.
Sylvie Kieffer-JaquinodInstitut de Recherches en Technologies et Sciences pour le Vivant, Laboratoire de Biologie à Grande Echelle, Université Grenoble Alpes, CEA, INSERM, 17 rue des Martyrs, F-38000 Grenoble, France.
Andrés PalenciaEuropean Molecular Biology Laboratory Outstation, 71 avenue des Martyrs, F-38042 Grenoble, France and Unit for Virus Host-Cell Interactions, Université Grenoble Alpes-EMBL-CNRS, 71 avenue des Martyrs, 38042 France.
David CobessiUniversité Grenoble Alpes, CEA, CNRS, Direction des Sciences du Vivant, Institut de Biologie Structurale, 6 rue Jules Horowitz, F-38044 Grenoble, France.
Géraldine SarretUniversité Grenoble Alpes, CNRS & IRD, ISTerre, BP 53, F-38041 Grenoble, France.
Chloé ZubietaInstitut de Recherches en Technologies et Sciences pour le Vivant, Laboratoire de Physiologie Cellulaire et Végétale, CEA, Université Grenoble Alpes, CNRS UMR5168, INRA USC1359.
Agnès JourdainInstitut de Recherches en Technologies et Sciences pour le Vivant, Laboratoire de Physiologie Cellulaire et Végétale, CEA, Université Grenoble Alpes, CNRS UMR5168, INRA USC1359.
Renaud DumasInstitut de Recherches en Technologies et Sciences pour le Vivant, Laboratoire de Physiologie Cellulaire et Végétale, CEA, Université Grenoble Alpes, CNRS UMR5168, INRA USC1359.
Vincent ForgeLaboratoire de Chimie et Biologie des Métaux, Université Grenoble Alpes, CEA, CNRS, Institut de Recherches en Technologies et Sciences pour le Vivant, 17 rue des Martyrs, F-38000 Grenoble, France, and.
Denis TestemaleUniversité Grenoble Alpes, CNRS, Institut NEEL, 25 rue des Martyrs, F-38042 Grenoble, France.
Jacques BourguignonInstitut de Recherches en Technologies et Sciences pour le Vivant, Laboratoire de Physiologie Cellulaire et Végétale, CEA, Université Grenoble Alpes, CNRS UMR5168, INRA USC1359.
Véronique HugouvieuxInstitut de Recherches en Technologies et Sciences pour le Vivant, Laboratoire de Physiologie Cellulaire et Végétale, CEA, Université Grenoble Alpes, CNRS UMR5168, INRA USC1359,. Electronic address: Veronique.hugouvieux@cea.fr.
Laboratoire Physiologie Cellulaire & Végétale · FRCEA Grenoble · FRCentre National de la Recherche Scientifique · FRInstitut de Biologie Structurale · FRInstitut des Sciences de la Terre · FRLaboratoire Biologie à Grande Échelle · FRUnit of Virus Host Cell Interactions · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The function of selenium-binding protein 1 (SBP1), present in almost all organisms, has not yet been established. In mammals, SBP1 is known to bind the essential element selenium but the binding site has not been identified. In addition, the SBP family has numerous potential metal-binding sites that may play a role in detoxification pathways in plants. In Arabidopsis thaliana, AtSBP1 over-expression increases tolerance to two toxic compounds for plants, selenium and cadmium, often found as soil pollutants. For a better understanding of AtSBP1 function in detoxification mechanisms, we investigated the chelating properties of the protein toward different ligands with a focus on selenium using biochemical and biophysical techniques. Thermal shift assays together with inductively coupled plasma mass spectrometry revealed that AtSBP1 binds selenium after incubation with selenite (SeO3(2-)) with a ligand to protein molar ratio of 1:1. Isothermal titration calorimetry confirmed the 1:1 stoichiometry and revealed an unexpectedly large value of binding enthalpy suggesting a covalent bond between selenium and AtSBP1. Titration of reduced Cys residues and comparative mass spectrometry on AtSBP1 and the purified selenium-AtSBP1 complex identified Cys(21) and Cys(22) as being responsible for the binding of one selenium. These results were validated by site-directed mutagenesis. Selenium K-edge x-ray absorption near edge spectroscopy performed on the selenium-AtSBP1 complex demonstrated that AtSBP1 reduced SeO3(2-) to form a R-S-Se(II)-S-R-type complex. The capacity of AtSBP1 to bind different metals and selenium is discussed with respect to the potential function of AtSBP1 in detoxification mechanisms and selenium metabolism.

Indexed as

Gene Expression Regulation, PlantAmino Acid SequenceAnimalsArabidopsisArabidopsis ProteinsBinding SitesCarrier ProteinsCysteineHumansLigandsMolecular ConformationMolecular Sequence DataMutagenesis, Site-DirectedProtein BindingRecombinant ProteinsSeleniumArabidopsis ProteinsCarrier ProteinsCysteineLigandsRecombinant ProteinsSBP1 protein, ArabidopsisSELENBP1 protein, humanSeleniumSelenium-Binding ProteinsPlant BiochemistryProtein Chemical ModificationProteomicsSeleniumX-ray Absorption Spectroscopy

Identifiers

PMID25274629
PMCPMC4231655
OpenAlexW1996750559

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.