Evidence map›Paper›PMID 25272156›Full record

ArticlePloS one2014

Population structure and comparative genome hybridization of European flor yeast reveal a unique group of Saccharomyces cerevisiae strains with few gene duplications in their genome.

Jean-Luc Legras, Claude Erny, Claudine Charpentier

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
6.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
  2. Genomic Adaptations ofMicroorganisms · 2022
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Aneuploidy and Ethanol Tolerance inFrontiers in genetics · 2019
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Flor Yeast: New Perspectives Beyond Wine Aging.Frontiers in microbiology · 2016
    Review
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Jean-Luc LegrasINRA, UMR1083 Science pour l'Œnologie, Montpellier, France; Montpellier SupAgro, UMR1083 Science pour l'Œnologie, Montpellier, France; Université Montpellier 1, UMR1083 Science pour l'Œnologie, Montpellier, France.
Claude ErnyUniversité de Haute Alsace, Laboratoire Vigne Biotechnologies et Environnement, Colmar, France.
Claudine CharpentierInstitut Universitaire de la Vigne et du Vin, Université de Bourgogne, Dijon, France.
Institut Agro Montpellier · FRInstitut Français de la Vigne et du Vin · FRUniversité de Haute-Alsace · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Wine biological aging is a wine making process used to produce specific beverages in several countries in Europe, including Spain, Italy, France, and Hungary. This process involves the formation of a velum at the surface of the wine. Here, we present the first large scale comparison of all European flor strains involved in this process. We inferred the population structure of these European flor strains from their microsatellite genotype diversity and analyzed their ploidy. We show that almost all of these flor strains belong to the same cluster and are diploid, except for a few Spanish strains. Comparison of the array hybridization profile of six flor strains originating from these four countries, with that of three wine strains did not reveal any large segmental amplification. Nonetheless, some genes, including YKL221W/MCH2 and YKL222C, were amplified in the genome of four out of six flor strains. Finally, we correlated ICR1 ncRNA and FLO11 polymorphisms with flor yeast population structure, and associate the presence of wild type ICR1 and a long Flo11p with thin velum formation in a cluster of Jura strains. These results provide new insight into the diversity of flor yeast and show that combinations of different adaptive changes can lead to an increase of hydrophobicity and affect velum formation.

Indexed as

Gene DuplicationGenome, FungalGenomicsAmino Acid SequenceBase SequenceCluster AnalysisComparative Genomic HybridizationGenetic LociGenetic VariationMembrane GlycoproteinsMicrosatellite RepeatsMolecular Sequence DataPhylogenySaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSequence AlignmentFLO11 protein, S cerevisiaeMembrane GlycoproteinsSaccharomyces cerevisiae Proteins

Identifiers

PMID25272156
PMCPMC4182726
OpenAlexW1972770670

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.