ArticleGenetics2014
Linkage disequilibrium with linkage analysis of multiline crosses reveals different multiallelic QTL for hybrid performance in the flint and dent heterotic groups of maize.
Article in Genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers, 1 of them a synthesis that pooled it.
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Who cites it
56 citing papers in PubMed, 1 synthesis or guideline pooled it.
- metaGE: Investigating genotype x environment interactions through GWAS meta-analysis.PLoS genetics · 2025Pooled it
- Novel perpetual genetic population development and genome assembly of superior maize inbred lines provide insights into genetic improvement.BMC biology · 2025Article
- Genomic prediction-aided incorporation of genetic resources into elite breeding: lessons from a collaborative multiparental design in flint maize.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Combined Genome-Wide Association Study and Linkage Analysis for Mining Candidate Genes for the Kernel Row Number in Maize (Plants (Basel, Switzerland) · 2024Article
- Genetic mapping reveals new loci and alleles for flowering time and plant height using the double round-robin population of barley.Journal of experimental botany · 2024Article
- Article
- Modeling QTL-by-environment interactions for multi-parent populations.Frontiers in plant science · 2024Article
- Identifying QTLs involved in hybrid performance and heterotic group complementarity: new GWAS models applied to factorial and admixed diallel maize hybrid panels.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- Improving the use of plant genetic resources to sustain breeding programs' efficiency.Proceedings of the National Academy of Sciences of the United States of America · 2023Article
- Genomic prediction for the Germplasm Enhancement of Maize project.The plant genome · 2022Article
- An Integration of Linkage Mapping and GWAS Reveals the Key Genes for Ear Shank Length in Maize.International journal of molecular sciences · 2022Article
- statgenMPP: an R package implementing an IBD-based mixed model approach for QTL mapping in a wide range of multi-parent populations.Bioinformatics (Oxford, England) · 2022Article
- Modeling allelic diversity of multiparent mapping populations affects detection of quantitative trait loci.G3 (Bethesda, Md.) · 2022Article
- Multiallelic models for QTL mapping in diverse polyploid populations.BMC bioinformatics · 2022Article
- An IBD-based mixed model approach for QTL mapping in multiparental populations.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021Article
- Joint analysis of days to flowering reveals independent temperate adaptations in maize.Heredity · 2021Article
- Identifying quantitative trait loci for the general combining ability of yield-relevant traits in maize.Breeding science · 2021Article
- The influence of QTL allelic diversity on QTL detection in multi-parent populations: a simulation study in sugar beet.BMC genomic data · 2021Article
- A combination of linkage mapping and GWAS brings new elements on the genetic basis of yield-related traits in maize across multiple environments.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
- Multi-parent multi-environment QTL analysis: an illustration with the EU-NAM Flint population.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2020Article
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19 authors.
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Abstract
Multiparental designs combined with dense genotyping of parents have been proposed as a way to increase the diversity and resolution of quantitative trait loci (QTL) mapping studies, using methods combining linkage disequilibrium information with linkage analysis (LDLA). Two new nested association mapping designs adapted to European conditions were derived from the complementary dent and flint heterotic groups of maize (Zea mays L.). Ten biparental dent families (N = 841) and 11 biparental flint families (N = 811) were genotyped with 56,110 single nucleotide polymorphism markers and evaluated as test crosses with the central line of the reciprocal design for biomass yield, plant height, and precocity. Alleles at candidate QTL were defined as (i) parental alleles, (ii) haplotypic identity by descent, and (iii) single-marker groupings. Between five and 16 QTL were detected depending on the model, trait, and genetic group considered. In the flint design, a major QTL (R(2) = 27%) with pleiotropic effects was detected on chromosome 10, whereas other QTL displayed milder effects (R(2) < 10%). On average, the LDLA models detected more QTL but generally explained lower percentages of variance, consistent with the fact that most QTL display complex allelic series. Only 15% of the QTL were common to the two designs. A joint analysis of the two designs detected between 15 and 21 QTL for the five traits. Of these, between 27 for silking date and 41% for tasseling date were significant in both groups. Favorable allelic effects detected in both groups open perspectives for improving biomass production.
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