Evidence map›Paper›PMID 25271167›Full record

ArticleThe Journal of biological chemistry2014

A group 6 late embryogenesis abundant protein from common bean is a disordered protein with extended helical structure and oligomer-forming properties.

Lucero Y Rivera-Najera, Gloria Saab-Rincón, Marina Battaglia, Carlos Amero, Nancy O Pulido, Enrique García-Hernández, Rosa M Solórzano, José L Reyes, Alejandra A Covarrubias

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 47 citations in OpenAlex.

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  15. Structural disorder in plant proteins: where plasticity meets sessility.Cellular and molecular life sciences : CMLS · 2017
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Lucero Y Rivera-NajeraDepartamentos de Biología Molecular de Plantas and Universidad Nacional Autónoma de México, Apdo. Postal 510-3, 62250 Cuernavaca, Mor.
Gloria Saab-RincónDepartamentos de Ingeniería Celular y Biocatálisis, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Apdo. Postal 510-3, 62250 Cuernavaca, Mor.
Marina BattagliaDepartamentos de Biología Molecular de Plantas and Universidad Nacional Autónoma de México, Apdo. Postal 510-3, 62250 Cuernavaca, Mor.
Carlos AmeroCentro de Investigaciones Químicas, Universidad Autónoma del Estado de Morelos, Av. Universidad No. 1001, Col Chamilpa, 62209 Cuernavaca, Morelos, and.
Nancy O PulidoInstituto de Química, Universidad Nacional Autónoma de México, Circuito Exterior, Ciudad Universitaria, México 04510, D. F. México.
Enrique García-HernándezInstituto de Química, Universidad Nacional Autónoma de México, Circuito Exterior, Ciudad Universitaria, México 04510, D. F. México.
Rosa M SolórzanoDepartamentos de Biología Molecular de Plantas and Universidad Nacional Autónoma de México, Apdo. Postal 510-3, 62250 Cuernavaca, Mor.
José L ReyesDepartamentos de Biología Molecular de Plantas and Universidad Nacional Autónoma de México, Apdo. Postal 510-3, 62250 Cuernavaca, Mor.
Alejandra A CovarrubiasDepartamentos de Biología Molecular de Plantas and Universidad Nacional Autónoma de México, Apdo. Postal 510-3, 62250 Cuernavaca, Mor.. Electronic address: crobles@ibt.unam.mx.
Universidad Nacional Autónoma de México · MXUniversidad Autónoma del Estado de Morelos · MX

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Late embryogenesis-abundant proteins accumulate to high levels in dry seeds. Some of them also accumulate in response to water deficit in vegetative tissues, which leads to a remarkable association between their presence and low water availability conditions. A major sub-group of these proteins, also known as typical LEA proteins, shows high hydrophilicity and a high percentage of glycine and other small amino acid residues, distinctive physicochemical properties that predict a high content of structural disorder. Although all typical LEA proteins share these characteristics, seven groups can be distinguished by sequence similarity, indicating structural and functional diversity among them. Some of these groups have been extensively studied; however, others require a more detailed analysis to advance in their functional understanding. In this work, we report the structural characterization of a group 6 LEA protein from a common bean (Phaseolus vulgaris L.) (PvLEA6) by circular dichroism and nuclear magnetic resonance showing that it is a disordered protein in aqueous solution. Using the same techniques, we show that despite its unstructured nature, the addition of trifluoroethanol exhibited an intrinsic potential in this protein to gain helicity. This property was also promoted by high osmotic potentials or molecular crowding. Furthermore, we demonstrate that PvLEA6 protein is able to form soluble homo-oligomeric complexes that also show high levels of structural disorder. The association between PvLEA6 monomers to form dimers was shown to occur in plant cells by bimolecular fluorescence complementation, pointing to the in vivo functional relevance of this association.

Indexed as

Amino Acid SequenceCalorimetryChromatography, GelCircular DichroismCross-Linking ReagentsFluorometryMagnetic Resonance SpectroscopyMass SpectrometryMolecular Sequence DataOsmolar ConcentrationPhaseolusPlant ProteinsProtein BindingProtein Structure, SecondaryRecombinant ProteinsSequence Homology, Amino AcidCross-Linking Reagentslate embryogenesis abundant protein, plantPlant ProteinsRecombinant ProteinsWaterIntrinsically Disordered ProteinIsothermal Titration Calorimetry (ITC)Plant BiologyProtein ConformationProtein Self-assemblyProtein StructureStress Response

Identifiers

PMID25271167
PMCPMC4231677
OpenAlexW2334634477

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.