Evidence map›Paper›PMID 25271152›Full record

ArticleThe Journal of biological chemistry2014

Class IIa histone deacetylases are conserved regulators of circadian function.

Paul C M Fogg, John S O'Neill, Tomasz Dobrzycki, Shaun Calvert, Emma C Lord, Rebecca L L McIntosh, Christopher J H Elliott, Sean T Sweeney, Michael H Hastings, Sangeeta Chawla

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 42 citations in OpenAlex.

  1. Hepatocellular Carcinoma Around the Clock.Current oncology (Toronto, Ont.) · 2026
    Review
  2. A Quantitative Model of Sporadic Axonal Degeneration in theThe Journal of neuroscience : the official journal of the Society for Neuroscience · 2022
    Article
  3. Integration of Circadian Clock Information in theJournal of biological rhythms · 2021
    Review
  4. Epigenetic regulation of post-embryonic development.Current opinion in insect science · 2021
    Review
  5. Critical review of non-histone human substrates of metal-dependent lysine deacetylases.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2020
    Review
  6. Epigenetic Molecular Mechanisms in Insects.Neotropical entomology · 2020
    Review
  7. Article
  8. Article
  9. Biology open · 2018
    Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. SIK3-HDAC4 signaling regulatesProceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  15. Prostaglandin dehydrogenase is a target for successful induction of cervical ripening.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Paul C M FoggFrom the Department of Biology, University of York, York YO10 5DD, United Kingdom and.
John S O'Neillthe Medical Research Council Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, United Kingdom.
Tomasz DobrzyckiFrom the Department of Biology, University of York, York YO10 5DD, United Kingdom and.
Shaun CalvertFrom the Department of Biology, University of York, York YO10 5DD, United Kingdom and.
Emma C LordFrom the Department of Biology, University of York, York YO10 5DD, United Kingdom and.
Rebecca L L McIntoshFrom the Department of Biology, University of York, York YO10 5DD, United Kingdom and.
Christopher J H ElliottFrom the Department of Biology, University of York, York YO10 5DD, United Kingdom and.
Sean T SweeneyFrom the Department of Biology, University of York, York YO10 5DD, United Kingdom and.
Michael H Hastingsthe Medical Research Council Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge CB2 0QH, United Kingdom.
Sangeeta ChawlaFrom the Department of Biology, University of York, York YO10 5DD, United Kingdom and sangeeta.chawla@york.ac.uk.
University of York · GBMRC Laboratory of Molecular Biology · GB

Funding

Biotechnology and Biological Sciences Research Council 8/JF/20603Biotechnology and Biological Sciences Research Council JF20603Medical Research Council MC_U105170643Medical Research Council MC_UP_1201/4
6 · The paper itself

Abstract

Class IIa histone deacetylases (HDACs) regulate the activity of many transcription factors to influence liver gluconeogenesis and the development of specialized cells, including muscle, neurons, and lymphocytes. Here, we describe a conserved role for class IIa HDACs in sustaining robust circadian behavioral rhythms in Drosophila and cellular rhythms in mammalian cells. In mouse fibroblasts, overexpression of HDAC5 severely disrupts transcriptional rhythms of core clock genes. HDAC5 overexpression decreases BMAL1 acetylation on Lys-537 and pharmacological inhibition of class IIa HDACs increases BMAL1 acetylation. Furthermore, we observe cyclical nucleocytoplasmic shuttling of HDAC5 in mouse fibroblasts that is characteristically circadian. Mutation of the Drosophila homolog HDAC4 impairs locomotor activity rhythms of flies and decreases period mRNA levels. RNAi-mediated knockdown of HDAC4 in Drosophila clock cells also dampens circadian function. Given that the localization of class IIa HDACs is signal-regulated and influenced by Ca(2+) and cAMP signals, our findings offer a mechanism by which extracellular stimuli that generate these signals can feed into the molecular clock machinery.

Indexed as

Gene Expression RegulationAcetylationAnimalsARNTL Transcription FactorsCalciumCircadian ClocksCLOCK ProteinsConserved SequenceCyclic AMPDrosophila melanogasterDrosophila ProteinsGenes, ReporterHistone Deacetylase InhibitorsHistone DeacetylasesLuciferasesMiceARNTL Transcription FactorsBmal1 protein, mouseCalciumClk protein, DrosophilaCLOCK ProteinsCyclic AMPDrosophila ProteinsHDAC4 protein, DrosophilaHdac5 protein, mouseHistone Deacetylase InhibitorsHistone DeacetylasesLuciferasesPeriod Circadian ProteinsRNA, MessengerRNA, Small InterferingCircadian RhythmClock GeneDrosophilaHistone Deacetylase (HDAC)Nuclear Translocation

Identifiers

PMID25271152
PMCPMC4256363
OpenAlexW2053565628

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.