Evidence map›Paper›PMID 25269599›Full record

ArticleScientific reports2014

Structure, function and inhibition of ent-kaurene synthase from Bradyrhizobium japonicum.

Wenting Liu, Xinxin Feng, Yingying Zheng, Chun-Hsiang Huang, Chiaki Nakano, Tsutomu Hoshino, Shannon Bogue, Tzu-Ping Ko, Chun-Chi Chen, Yunfeng Cui and 5 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 51 citations in OpenAlex.

  1. RSC advances · 2026
    Article
  2. Article
  3. Article
  4. Review
  5. Pimarane Diterpenes from Fungi.Pharmaceuticals (Basel, Switzerland) · 2022
    Review
  6. Article
  7. Efficient production of clerodane andBeilstein journal of organic chemistry · 2022
    Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Biosynthetic Origin of the Ether Ring in Platensimycin.Journal of the American Chemical Society · 2016
    Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 3 countries.

Wenting Liu1] Industrial Enzymes National Engineering Laboratory, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, China [2].
Xinxin Feng1] Department of Chemistry, University of Illinois, Urbana, IL 61801, USA [2].
Yingying Zheng1] Industrial Enzymes National Engineering Laboratory, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, China [2].
Chun-Hsiang HuangIndustrial Enzymes National Engineering Laboratory, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, China.
Chiaki NakanoDepartment of Applied Biological Chemistry, Niigata University, Niigata 950-2181, Japan.
Tsutomu HoshinoDepartment of Applied Biological Chemistry, Niigata University, Niigata 950-2181, Japan.
Shannon BogueDepartment of Chemistry, University of Illinois, Urbana, IL 61801, USA.
Tzu-Ping KoInstitute of Biological Chemistry, Academia Sinica, Taipei 115, Taiwan.
Chun-Chi ChenIndustrial Enzymes National Engineering Laboratory, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, China.
Yunfeng CuiIndustrial Enzymes National Engineering Laboratory, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, China.
Jian LiIndustrial Enzymes National Engineering Laboratory, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, China.
Iren WangInstitute of Biological Chemistry, Academia Sinica, Taipei 115, Taiwan.
Shang-Te Danny HsuInstitute of Biological Chemistry, Academia Sinica, Taipei 115, Taiwan.
Eric OldfieldDepartment of Chemistry, University of Illinois, Urbana, IL 61801, USA.
Rey-Ting GuoIndustrial Enzymes National Engineering Laboratory, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin 300308, China.
Institute of Biological Chemistry, Academia Sinica · TWTianjin Institute of Industrial Biotechnology · CNChinese Academy of Sciences · CNUniversity of Illinois Urbana-Champaign · US

Funding

Structure, Function and Inhibition of [4Fe-4S] ProteinsR01GM065307 · NIGMS · UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN · PI OLDFIELD, ERIC · 2002 to 2017
$5.4M
Next generation bisphosphonates for chemo- and immuno-therapyR01CA158191 · NCI · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI OLDFIELD, ERIC · 2011 to 2015
$1.6M
NCI NIH HHS CA158191NCI NIH HHS R01 CA158191NIGMS NIH HHS GM065307NIGMS NIH HHS R01 GM065307
6 · The paper itself

Abstract

We report the first X-ray crystal structure of ent-kaur-16-ene synthase from Bradyrhizobium japonicum, together with the results of a site-directed mutagenesis investigation into catalytic activity. The structure is very similar to that of the α domains of modern plant terpene cyclases, a result that is of interest since it has been proposed that many plant terpene cyclases may have arisen from bacterial diterpene cyclases. The ent-copalyl diphosphate substrate binds to a hydrophobic pocket near a cluster of Asp and Arg residues that are essential for catalysis, with the carbocations formed on ionization being protected by Leu, Tyr and Phe residues. A bisphosphonate inhibitor binds to the same site. In the kaurene synthase from the moss Physcomitrella patens, 16-α-hydroxy-ent-kaurane as well as kaurene are produced since Leu and Tyr in the P. patens kaurene synthase active site are replaced by smaller residues enabling carbocation quenching by water. Overall, the results represent the first structure determination of a bacterial diterpene cyclase, providing insights into catalytic activity, as well as structural comparisons with diverse terpene synthases and cyclases which clearly separate the terpene cyclases from other terpene synthases having highly α-helical structures.

Indexed as

Alkyl and Aryl TransferasesBradyrhizobiumChromatography, GelCloning, MolecularCrystallography, X-RayDiterpenes, KauraneEnzyme InhibitorsModels, MolecularMutagenesis, Site-DirectedMutationProtein ConformationSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationStructure-Activity RelationshipSubstrate SpecificityAlkyl and Aryl TransferasesDiterpenes, Kauraneent-kaurene synthetase BEnzyme Inhibitorskaureneterpene synthase

Identifiers

PMID25269599
PMCPMC4180811
OpenAlexW2076940322

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.