ArticlePloS one2014
Genome-wide characterization and expression profiling of the AUXIN RESPONSE FACTOR (ARF) gene family in Eucalyptus grandis.
Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.
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Who cites it
35 citing papers in PubMed.
- Comprehensive analysis of SDH genes in Populus and functional characterization of SDH4 in xylem and cambium development.BMC plant biology · 2025Article
- Genome-Wide Identification of the ARF Gene Family in Safflower (International journal of molecular sciences · 2025Article
- Analysis of growth variations and expression patterns of auxin response factor gene family inFrontiers in plant science · 2025Article
- ThePhysiology and molecular biology of plants : an international journal of functional plant biology · 2024Article
- Identification ofGenes · 2024Article
- Genomic survey and expression analysis of LcARFs reveal multiple functions to somatic embryogenesis in Liriodendron.BMC plant biology · 2024Article
- A Comprehensive Analysis of Auxin Response Factor Gene Family inInternational journal of molecular sciences · 2024Article
- Genome mining of WOX-ARF gene linkage inFrontiers in plant science · 2024Article
- Comparative Microscopic, Transcriptome and IAA Content Analyses Reveal the Stem Growth Variations in Two CultivarsPlants (Basel, Switzerland) · 2023Article
- LkARF7 and LkARF19 overexpression promote adventitious root formation in a heterologous poplar model by positively regulating LkBBM1.Communications biology · 2023Article
- Genome-Wide Identification and Characterization of Auxin Response Factor (ARF) Gene Family Involved in Wood Formation and Response to Exogenous Hormone Treatment inInternational journal of molecular sciences · 2023Article
- Systematic Identification and Expression Analysis of the Auxin Response Factor (ARF) Gene Family inInternational journal of molecular sciences · 2022Article
- Genome-Wide Identification of theInternational journal of molecular sciences · 2022Article
- Overexpression ofInternational journal of molecular sciences · 2022Article
- Eucalyptus grandis AUX/INDOLE-3-ACETIC ACID 13 (EgrIAA13) is a novel transcriptional regulator of xylogenesis.Plant molecular biology · 2022Article
- Effect of theGenes · 2022Article
- Genome-wide identification of auxin response factor (Physiology and molecular biology of plants : an international journal of functional plant biology · 2021Article
- Knockout of Auxin Response Factor SlARF4 Improves Tomato Resistance to Water Deficit.International journal of molecular sciences · 2021Article
- Implementing the CRISPR/Cas9 Technology inInternational journal of molecular sciences · 2020Article
- Identification of Candidate Auxin Response Factors Involved in Pomegranate Seed Coat Development.Frontiers in plant science · 2020Article
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Authors and funding
11 authors.
Funding
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Abstract
Auxin is a central hormone involved in a wide range of developmental processes including the specification of vascular stem cells. Auxin Response Factors (ARF) are important actors of the auxin signalling pathway, regulating the transcription of auxin-responsive genes through direct binding to their promoters. The recent availability of the Eucalyptus grandis genome sequence allowed us to examine the characteristics and evolutionary history of this gene family in a woody plant of high economic importance. With 17 members, the E. grandis ARF gene family is slightly contracted, as compared to those of most angiosperms studied hitherto, lacking traces of duplication events. In silico analysis of alternative transcripts and gene truncation suggested that these two mechanisms were preeminent in shaping the functional diversity of the ARF family in Eucalyptus. Comparative phylogenetic analyses with genomes of other taxonomic lineages revealed the presence of a new ARF clade found preferentially in woody and/or perennial plants. High-throughput expression profiling among different organs and tissues and in response to environmental cues highlighted genes expressed in vascular cambium and/or developing xylem, responding dynamically to various environmental stimuli. Finally, this study allowed identification of three ARF candidates potentially involved in the auxin-regulated transcriptional program underlying wood formation.
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