Evidence map›Paper›PMID 25268755›Full record

ArticlePloS one2014

Characterization of the cryptic AV3 promoter of ageratum yellow vein virus in prokaryotic and eukaryotic systems.

Wei-Chen Wang, Chia-Ying Wu, Yi-Chin Lai, Na-Sheng Lin, Yau-Heiu Hsu, Chung-Chi Hu

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.9field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Wei-Chen WangGraduate Institute of Biotechnology, National Chung Hsing University, Taichung, Taiwan.
Chia-Ying WuGraduate Institute of Biotechnology, National Chung Hsing University, Taichung, Taiwan.
Yi-Chin LaiGraduate Institute of Biotechnology, National Chung Hsing University, Taichung, Taiwan.
Na-Sheng LinInstitute of Plant and Microbial Biology, Academia Sinica, Nankang, Taipei, Taiwan.
Yau-Heiu HsuGraduate Institute of Biotechnology, National Chung Hsing University, Taichung, Taiwan.
Chung-Chi HuGraduate Institute of Biotechnology, National Chung Hsing University, Taichung, Taiwan.
National Chung Hsing University · TWInstitute of Plant and Microbial Biology, Academia Sinica · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A cryptic prokaryotic promoter, designated AV3 promoter, has been previously identified in certain begomovirus genus, including ageratum yellow vein virus isolate NT (AYVV-NT). In this study, we demonstrated that the core nucleotides in the putative -10 and -35 boxes are necessary but not sufficient for promoter activity in Escherichia coli, and showed that AYVV-NT AV3 promoter could specifically interact with single-stranded DNA-binding protein and sigma 70 of E. coli involved in transcription. Several AYVV-NT-encoded proteins were found to increase the activity of AV3 promoter. The transcription start sites downstream to AV3 promoter were mapped to nucleotide positions 803 or 805 in E. coli, and 856 in Nicotiana benthamiana. The eukaryotic activity of AV3 promoter and the translatability of a short downstream open reading frame were further confirmed by using a green fluorescent protein reporter construct in yeast (Saccharomyces cerevisiae) cells. These results suggested that AV3 promoter might be a remnant of evolution that retained cryptic activity at present.

Indexed as

Open Reading FramesPromoter Regions, GeneticAgeratumAgrobacteriumBase SequenceBegomovirusBiological EvolutionEscherichia coliGenome, ViralMolecular Sequence DataNicotianaPlant DiseasesSaccharomyces cerevisiaeTranscription, GeneticViral ProteinsViral Proteins

Identifiers

PMID25268755
PMCPMC4182527
OpenAlexW1999973522

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.