Evidence map›Paper›PMID 25268745›Full record

ArticleOncotarget2014

Integrated analysis of long noncoding RNAs and mRNAs reveals their potential roles in the pathogenesis of uterine leiomyomas.

Haiyang Guo, Xiyu Zhang, Ruifen Dong, Xiaolin Liu, Yinuo Li, Shan Lu, Limei Xu, Yuqiong Wang, Xiyao Wang, Dong Hou and 3 more

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it, 28 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Haiyang GuoDepartment of Molecular Medicine and Genetics and Ministry of Education Key Laboratory of Experimental Teratology, Shandong University, Jinan, Shandong, China. These authors contributed equally to this work.
Xiyu ZhangDepartment of Molecular Medicine and Genetics and Ministry of Education Key Laboratory of Experimental Teratology, Shandong University, Jinan, Shandong, China. These authors contributed equally to this work.
Ruifen DongDepartment of Obstetrics and Gynecology, Qilu Hospital, Shandong University, Jinan, Shandong, China.
Xiaolin LiuDepartment of Obstetrics and Gynecology, Qilu Hospital, Shandong University, Jinan, Shandong, China.
Yinuo LiDepartment of Cell Biology, Shandong University School of Medicine, Shandong University, Jinan, Shandong, China.
Shan LuDepartment of Cell Biology, Shandong University School of Medicine, Shandong University, Jinan, Shandong, China.
Limei XuDepartment of Cell Biology, Shandong University School of Medicine, Shandong University, Jinan, Shandong, China.
Yuqiong WangDepartment of Cell Biology, Shandong University School of Medicine, Shandong University, Jinan, Shandong, China.
Xiyao WangDepartment of Cell Biology, Shandong University School of Medicine, Shandong University, Jinan, Shandong, China.
Dong HouDepartment of Molecular Medicine and Genetics and Ministry of Education Key Laboratory of Experimental Teratology, Shandong University, Jinan, Shandong, China.
Jian-Jun WeiDepartment of Pathology, Northwestern University School of Medicine, Chicago, IL,USA.
Changshun ShaoDepartment of Molecular Medicine and Genetics and Ministry of Education Key Laboratory of Experimental Teratology, Shandong University, Jinan, Shandong, China.
Zhaojian LiuDepartment of Molecular Medicine and Genetics and Ministry of Education Key Laboratory of Experimental Teratology, Shandong University, Jinan, Shandong, China. Department of Cell Biology, Shandong University School of Medicine, Shandong University, Jinan, Shandong, China.
Shandong University · CNQilu Hospital of Shandong University · CNNorthwestern University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Global expression profiling studies showed that miRNAs are aberrantly expressed in uterine leiomyomas (ULMs) and are involved in ULM pathogenesis. Long noncoding RNAs (lncRNAs) are another group of regulatory RNA whose expression and roles in ULMs have not been explored. In this study, we examined the global expressions of lncRNAs and mRNAs in ULMs using microarray and interrogated their interrelationship through co-expression analysis. We found that lncRNAs and mRNAs were dysregulated in ULMs and the degree of dysregulation was positively correlated with tumor size. Further analysis showed that lncRNAs correlate to their cis mRNAs in expression levels depending on genomic locations and orientations. Moreover, we identified several dysregulated pathways that were correlated to dysregulated lncRNAs. We validated several aberrantly expressed lncRNAs in extended samples and confirmed that AK023096 was down-regulated and chromatin-associated RNA (CAR) Intergenic 10 was up-regulated in the majority of leiomyomas. Knockdown of Intergenic 10 inhibited the proliferation of leiomyoma cells in vitro, indicating its functional importance in ULM pathogenesis. The neighboring protein-coding gene ADAM12 was also downregulated in Intergenic 10 knockdown leiomyoma cells. We showed for the first time that lncRNAs were dysregulated in uterine leiomyomas. Aberrantly expressed lncRNAs may contribute to the pathogenesis of uterine leiomyomas.

Indexed as

Gene Expression ProfilingBiomarkers, TumorCell Line, TumorCell ProliferationCluster AnalysisFemaleGene Expression Regulation, NeoplasticGene Knockdown TechniquesGene Regulatory NetworksGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansLeiomyomaOligonucleotide Array Sequence AnalysisOvarian NeoplasmsPhenotypeBiomarkers, TumorRNA, Long NoncodingRNA, Messenger

Identifiers

PMID25268745
PMCPMC4226709
OpenAlexW1559702104

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.