Evidence map›Paper›PMID 25268584›Full record

ArticleThe Journal of investigative dermatology2015

The genomic landscape of childhood and adolescent melanoma.

Charles Lu, Jinghui Zhang, Panduka Nagahawatte, John Easton, Seungjae Lee, Zhifa Liu, Li Ding, Matthew A Wyczalkowski, Marcus Valentine, Fariba Navid and 24 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of investigative dermatology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed
7.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 178 citations in OpenAlex.

  1. Trial
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  3. Trial
  4. Review
  5. Review
  6. Article
  7. Dental treatment approaches under general anesthesia in children with cancer.Medicina oral, patologia oral y cirugia bucal · 2025
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. SJPedPanel: A Pan-Cancer Gene Panel for Childhood Malignancies to Enhance Cancer Monitoring and Early Detection.Clinical cancer research : an official journal of the American Association for Cancer Research · 2024
    Article
  13. Review
  14. Review
  15. Review
  16. Article
  17. Hotspot propensity across mutational processes.Molecular systems biology · 2024
    Article
  18. Article
  19. Article
  20. Review

11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

34 authors at 2 institutions in 1 country.

Charles LuThe Genome Institute, Washington University School of Medicine in St Louis, St Louis, Missouri, USA.
Jinghui ZhangDepartment of Computational Biology, St Jude Children's Research Hospital, Memphis, Tennessee, USA.
Panduka NagahawatteDepartment of Computational Biology, St Jude Children's Research Hospital, Memphis, Tennessee, USA.
John EastonDepartment of Computational Biology, St Jude Children's Research Hospital, Memphis, Tennessee, USA.
Seungjae LeeDepartment of Pathology, St Jude Children's Research Hospital, Memphis, Tennessee, USA.
Zhifa LiuDepartment of Biostatistics, St Jude Children's Research Hospital, Memphis, Tennessee, USA.
Li DingThe Genome Institute, Washington University School of Medicine in St Louis, St Louis, Missouri, USA; Department of Genetics, Washington University School of Medicine in St Louis, St Louis, Missouri, USA; Department of Medicine, Washington University School of Medicine in St Louis, St Louis, Missouri, USA; Siteman Cancer Center, Washington University School of Medicine in St Louis, St Louis, Missouri, USA.
Matthew A WyczalkowskiThe Genome Institute, Washington University School of Medicine in St Louis, St Louis, Missouri, USA.
Marcus ValentineDepartment of Cytogenetics, St Jude Children's Research Hospital, Memphis, Tennessee, USA.
Fariba NavidDepartment of Oncology, St Jude Children's Research Hospital, Memphis, Tennessee, USA.
Heather MulderDepartment of Computational Biology, St Jude Children's Research Hospital, Memphis, Tennessee, USA.
Ruth G TatevossianDepartment of Pathology, St Jude Children's Research Hospital, Memphis, Tennessee, USA.
James DaltonDepartment of Pathology, St Jude Children's Research Hospital, Memphis, Tennessee, USA.
James DavenportDepartment of Pathology, St Jude Children's Research Hospital, Memphis, Tennessee, USA.
Zhirong YinDepartment of Pathology, St Jude Children's Research Hospital, Memphis, Tennessee, USA.
Michael EdmonsonDepartment of Computational Biology, St Jude Children's Research Hospital, Memphis, Tennessee, USA.
Michael RuschDepartment of Computational Biology, St Jude Children's Research Hospital, Memphis, Tennessee, USA.
Gang WuDepartment of Computational Biology, St Jude Children's Research Hospital, Memphis, Tennessee, USA.
Yongjin LiDepartment of Computational Biology, St Jude Children's Research Hospital, Memphis, Tennessee, USA.
Matthew ParkerDepartment of Computational Biology, St Jude Children's Research Hospital, Memphis, Tennessee, USA.
Erin HedlundDepartment of Computational Biology, St Jude Children's Research Hospital, Memphis, Tennessee, USA.
Sheila ShurtleffDepartment of Pathology, St Jude Children's Research Hospital, Memphis, Tennessee, USA.
Susana RaimondiDepartment of Pathology, St Jude Children's Research Hospital, Memphis, Tennessee, USA.
Vadodaria BhavinDepartment of Computational Biology, St Jude Children's Research Hospital, Memphis, Tennessee, USA.
Yergeau DonaldDepartment of Computational Biology, St Jude Children's Research Hospital, Memphis, Tennessee, USA.
Elaine R MardisDepartment of Genetics, Washington University School of Medicine in St Louis, St Louis, Missouri, USA; Department of Medicine, Washington University School of Medicine in St Louis, St Louis, Missouri, USA; Siteman Cancer Center, Washington University School of Medicine in St Louis, St Louis, Missouri, USA.
Richard K WilsonDepartment of Genetics, Washington University School of Medicine in St Louis, St Louis, Missouri, USA; Department of Medicine, Washington University School of Medicine in St Louis, St Louis, Missouri, USA; Siteman Cancer Center, Washington University School of Medicine in St Louis, St Louis, Missouri, USA.
William E EvansDepartment of Pharmaceutical Sciences, St Jude Children's Research Hospital, Memphis, Tennessee, USA.
David W EllisonDepartment of Pathology, St Jude Children's Research Hospital, Memphis, Tennessee, USA.
Stanley PoundsDepartment of Biostatistics, St Jude Children's Research Hospital, Memphis, Tennessee, USA.
Michael DyerDepartment of Computational Biology, St Jude Children's Research Hospital, Memphis, Tennessee, USA.
James R DowningDepartment of Pathology, St Jude Children's Research Hospital, Memphis, Tennessee, USA.
Alberto PappoDepartment of Oncology, St Jude Children's Research Hospital, Memphis, Tennessee, USA. Electronic address: alberto.pappo@stjude.org.
Armita BahramiDepartment of Pathology, St Jude Children's Research Hospital, Memphis, Tennessee, USA. Electronic address: armita.bahrami@stjude.org.
St. Jude Children's Research Hospital · USWashington University in St. Louis · US

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
Proliferation Control in the Retina: The Rb FamilyR01EY014867 · NEI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI DYER, MICHAEL A · 2003 to 2012
$4.5M
Proliferation and Differentiation of Retinal Stem CellsR01EY018599 · NEI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI DYER, MICHAEL A · 2008 to 2011
$2.5M
Molecular Targeted Therapy for RetinoblastomaR01CA168875 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI DYER, MICHAEL A · 2012 to 2016
$1.8M
CANCER SUSCEPTIBILITY VARIANT DISCOVERY IN HIGH THROUGHPUT SEQUENCING DATAR01CA180006 · NCI · WASHINGTON UNIVERSITY · PI DING, LI · 2013 to 2016
$1.1M
Howard Hughes Medical InstituteNCI NIH HHS CA168875NCI NIH HHS CA21765NCI NIH HHS P30 CA021765NCI NIH HHS R01 CA168875NCI NIH HHS R01 CA180006NEI NIH HHS EY014867NEI NIH HHS EY018599NEI NIH HHS R01 EY014867NEI NIH HHS R01 EY018599
6 · The paper itself

Abstract

Despite remarkable advances in the genomic characterization of adult melanoma, the molecular pathogenesis of pediatric melanoma remains largely unknown. We analyzed 15 conventional melanomas (CMs), 3 melanomas arising in congenital nevi (CNMs), and 5 spitzoid melanomas (SMs), using various platforms, including whole genome or exome sequencing, the molecular inversion probe assay, and/or targeted sequencing. CMs demonstrated a high burden of somatic single-nucleotide variations (SNVs), with each case containing a TERT promoter (TERT-p) mutation, 13/15 containing an activating BRAF V600 mutation, and >80% of the identified SNVs consistent with UV damage. In contrast, the three CNMs contained an activating NRAS Q61 mutation and no TERT-p mutations. SMs were characterized by chromosomal rearrangements resulting in activated kinase signaling in 40%, and an absence of TERT-p mutations, except for the one SM that succumbed to hematogenous metastasis. We conclude that pediatric CM has a very similar UV-induced mutational spectrum to that found in the adult counterpart, emphasizing the need to promote sun protection practices in early life and to improve access to therapeutic agents being explored in adults in young patients. In contrast, the pathogenesis of CNM appears to be distinct. TERT-p mutations may identify the rare subset of spitzoid melanocytic lesions prone to disseminate.

Indexed as

AdolescentChildChild, PreschoolFollow-Up StudiesGenetic Predisposition to DiseaseGTP PhosphohydrolasesHumansMelanomaMembrane ProteinsNeoplasms, Radiation-InducedNevus, Epithelioid and Spindle CellNevus, PigmentedPolymorphism, Single NucleotideProto-Oncogene Proteins B-rafPTEN PhosphohydrolaseSkin NeoplasmsBRAF protein, humanGTP PhosphohydrolasesMembrane ProteinsNRAS protein, humanProto-Oncogene Proteins B-rafPTEN PhosphohydrolasePTEN protein, humanTelomeraseTERT protein, human

Identifiers

PMID25268584
PMCPMC4340976
OpenAlexW2055121214

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.