Evidence map›Paper›PMID 25267935›Full record

ArticleAdvancements in genetic engineering2012

Subtyping of Gliomaby Combining Gene Expression and CNVs Data Based on a Compressive Sensing Approach.

Wenlong Tang, Hongbao Cao, Ji-Gang Zhang, Junbo Duan, Dongdong Lin, Yu-Ping Wang

Abstract read
In one paragraph

Article in Advancements in genetic engineering, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Wenlong TangDepartment of Biomedical Engineering, Tulane University, New Orleans, USA.
Hongbao CaoDepartment of Biomedical Engineering, Tulane University, New Orleans, USA.
Ji-Gang ZhangDepartment of Biostatistics and Bioinformatics, Tulane University, New Orleans, USA.
Junbo DuanDepartment of Biomedical Engineering, Tulane University, New Orleans, USA.
Dongdong LinDepartment of Biomedical Engineering, Tulane University, New Orleans, USA.
Yu-Ping WangDepartment of Biomedical Engineering, Tulane University, New Orleans, USA ; Department of Biostatistics and Bioinformatics, Tulane University, New Orleans, USA.

Funding

A New Paradigm for Integrated Analysis of Multiscale Genomic Imaging DatasetsR21LM010042 · NLM · UNIVERSITY OF MISSOURI KANSAS CITY · PI WANG, YU-PING · 2009 to 2010
$406k
NLM NIH HHS R21 LM010042
6 · The paper itself

Abstract

It is realized that a combined analysis of different types of genomic measurements tends to give more reliable classification results. However, how to efficiently combine data with different resolutions is challenging. We propose a novel compressed sensing based approach for the combined analysis of gene expression and copy number variants data for the purpose of subtyping six types of Gliomas. Experimental results show that the proposed combined approach can substantially improve the classification accuracy compared to that of using either of individual data type. The proposed approach can be applicable to many other types of genomic data.

Indexed as

ClassificationCNVs dataCombined AnalysisCompressive SensingGene ExpressionGlioma

Identifiers

PMID25267935
PMCPMC4176925

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.