Evidence map›Paper›PMID 25267621›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Structural basis of cellular dNTP regulation by SAMHD1.

Xiaoyun Ji, Chenxiang Tang, Qi Zhao, Wei Wang, Yong Xiong

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 86 papers.

0numbers the graph read from it
0cells of the map it votes in
86citing papers in PubMed
5.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

86 citing papers in PubMed, 143 citations in OpenAlex.

  1. Article
  2. Review
  3. Transition metal activation reframes SAMHD1 regulation.bioRxiv : the preprint server for biology · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Blockade ofmBio · 2025
    Article
  10. Review
  11. Transition State Analysis of SAMHD1 from PrimaryJournal of the American Chemical Society · 2025
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review

26 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Xiaoyun JiDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520.
Chenxiang TangDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520.
Qi ZhaoDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520.
Wei WangDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520.
Yong XiongDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520 yong.xiong@yale.edu.
Yale University · US

Funding

Life Science and Biomedical technology Research center at NSLS-II LSBRP41GM111244 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI MCSWEENEY, SEAN · 2014 to 2018
$16.4M
Mechanisms of enveloped virus tethering by tetherin and viral countermeasuresR01AI097064 · NIAID · YALE UNIVERSITY · PI XIONG, YONG · 2011 to 2015
$2.0M
NIAID NIH HHS AI097064NIAID NIH HHS R01 AI097064NIGMS NIH HHS P41 GM111244
6 · The paper itself

Abstract

The sterile alpha motif and HD domain-containing protein 1 (SAMHD1), a dNTPase, prevents the infection of nondividing cells by retroviruses, including HIV, by depleting the cellular dNTP pool available for viral reverse transcription. SAMHD1 is a major regulator of cellular dNTP levels in mammalian cells. Mutations in SAMHD1 are associated with chronic lymphocytic leukemia (CLL) and the autoimmune condition Aicardi Goutières syndrome (AGS). The dNTPase activity of SAMHD1 can be regulated by dGTP, with which SAMHD1 assembles into catalytically active tetramers. Here we present extensive biochemical and structural data that reveal an exquisite activation mechanism of SAMHD1 via combined action of both GTP and dNTPs. We obtained 26 crystal structures of SAMHD1 in complex with different combinations of GTP and dNTP mixtures, which depict the full spectrum of GTP/dNTP binding at the eight allosteric and four catalytic sites of the SAMHD1 tetramer. Our data demonstrate how SAMHD1 is activated by binding of GTP or dGTP at allosteric site 1 and a dNTP of any type at allosteric site 2. Our enzymatic assays further reveal a robust regulatory mechanism of SAMHD1 activity, which bares resemblance to that of the ribonuclease reductase responsible for cellular dNTP production. These results establish a complete framework for a mechanistic understanding of the important functions of SAMHD1 in the regulation of cellular dNTP levels, as well as in HIV restriction and the pathogenesis of CLL and AGS.

Indexed as

Allosteric SiteCatalytic DomainCrystallography, X-RayGuanosine TriphosphateHumansHydrolysisKineticsLigandsModels, MolecularMonomeric GTP-Binding ProteinsNucleotidesProtein MultimerizationRibonucleotide ReductasesSAM Domain and HD Domain-Containing Protein 1Substrate SpecificityGuanosine TriphosphateLigandsMonomeric GTP-Binding ProteinsNucleotidesRibonucleotide ReductasesSAM Domain and HD Domain-Containing Protein 1SAMHD1 protein, humanallosteric regulationdNTP metabolismHIV restriction factortetramerizationtriphosphohydrolase

Identifiers

PMID25267621
PMCPMC4205617
OpenAlexW1978010534

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.