Evidence map›Paper›PMID 25266725›Full record

ArticleThe Journal of biological chemistry2014

Identification of the pharmacophore of the CC chemokine-binding proteins Evasin-1 and -4 using phage display.

Pauline Bonvin, Steven M Dunn, François Rousseau, Douglas P Dyer, Jeffrey Shaw, Christine A Power, Tracy M Handel, Amanda E I Proudfoot

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 24 citations in OpenAlex.

  1. Review
  2. Structural basis of chemokine recognition by the class A3 tick evasin EVA-ACA1001.Protein science : a publication of the Protein Society · 2024
    Article
  3. Review
  4. Structure-guided engineering of tick evasins for targeting chemokines in inflammatory diseases.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  5. Perspectives on the Biological Role of Chemokine:Glycosaminoglycan Interactions.The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society · 2021
    Review
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Chemokines from a Structural Perspective.International journal of molecular sciences · 2017
    Review
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Pauline BonvinMerck Serono Geneva Research Centre, 9 chemin des Mines, 1202 Geneva, Switzerland,; NovImmune SA, 14 chemin des Aulx, 1228 Plan-les-Ouates, Geneva, Switzerland, and.
Steven M DunnMerck Serono Geneva Research Centre, 9 chemin des Mines, 1202 Geneva, Switzerland.
François RousseauNovImmune SA, 14 chemin des Aulx, 1228 Plan-les-Ouates, Geneva, Switzerland, and.
Douglas P DyerSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California at San Diego, La Jolla, California 92093-0684.
Jeffrey ShawMerck Serono Geneva Research Centre, 9 chemin des Mines, 1202 Geneva, Switzerland.
Christine A PowerMerck Serono Geneva Research Centre, 9 chemin des Mines, 1202 Geneva, Switzerland.
Tracy M HandelSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California at San Diego, La Jolla, California 92093-0684.
Amanda E I ProudfootMerck Serono Geneva Research Centre, 9 chemin des Mines, 1202 Geneva, Switzerland,; NovImmune SA, 14 chemin des Aulx, 1228 Plan-les-Ouates, Geneva, Switzerland, and. Electronic address: amandapf@orange.fr.
Merck Serono (Switzerland) · CHLight Chain Bioscience (Switzerland) · CHUniversity of Montana · US

Funding

STRUCTURE OF MACROPHAGE CHEMOTACTIC ACTIVATING PROTEINSR01AI037113 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HANDEL, TRACY M · 1995 to 2015
$5.2M
NIAID NIH HHS R01 AI037113NIAID NIH HHS R01AI37113
6 · The paper itself

Abstract

To elucidate the ligand-binding surface of the CC chemokine-binding proteins Evasin-1 and Evasin-4, produced by the tick Rhipicephalus sanguineus, we sought to identify the key determinants responsible for their different chemokine selectivities by expressing Evasin mutants using phage display. We first designed alanine mutants based on the Evasin-1·CCL3 complex structure and an in silico model of Evasin-4 bound to CCL3. The mutants were displayed on M13 phage particles, and binding to chemokine was assessed by ELISA. Selected variants were then produced as purified proteins and characterized by surface plasmon resonance analysis and inhibition of chemotaxis. The method was validated by confirming the importance of Phe-14 and Trp-89 to the inhibitory properties of Evasin-1 and led to the identification of a third crucial residue, Asn-88. Two amino acids, Glu-16 and Tyr-19, were identified as key residues for binding and inhibition of Evasin-4. In a parallel approach, we identified one clone (Y28Q/N60D) that showed a clear reduction in binding to CCL3, CCL5, and CCL8. It therefore appears that Evasin-1 and -4 use different pharmacophores to bind CC chemokines, with the principal binding occurring through the C terminus of Evasin-1, but through the N-terminal region of Evasin-4. However, both proteins appear to target chemokine N termini, presumably because these domains are key to receptor signaling. The results also suggest that phage display may offer a useful approach for rapid investigation of the pharmacophores of small inhibitory binding proteins.

Indexed as

AlanineAmino Acid SequenceAnimalsCell MovementChemokine CCL3Chemokine CCL5Chemokine CCL8Chemokines, CCChemotaxisCrystallography, X-RayEnzyme-Linked Immunosorbent AssayGlycosylationHEK293 CellsHumansLigandsMolecular Sequence DataAlanineCCL3 protein, humanCCL5 protein, humanCCL8 protein, humanChemokine CCL3Chemokine CCL5Chemokine CCL8Chemokines, CCEvasin-1, Rhipicephalus sanguineusLigandsPeptide LibraryReceptors, ChemokineCell MigrationChemokineChemokine Binding ProteinChemotaxisEpitope MappingPhage DisplayPharmacophore

Identifiers

PMID25266725
PMCPMC4231662
OpenAlexW1967236801

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.