Evidence map›Paper›PMID 25265384›Full record

ArticlePloS one2014

Cryptic determinant of α4β7 binding in the V2 loop of HIV-1 gp120.

Boonrat Tassaneetrithep, Doreen Tivon, James Swetnam, Nicos Karasavvas, Nelson L Michael, Jerome H Kim, Mary Marovich, Timothy Cardozo

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 35 citations in OpenAlex.

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  16. Blocking αScience (New York, N.Y.) · 2019
    Article
  17. Review
  18. Article
  19. Article
  20. The Role of Integrin αCurrent HIV/AIDS reports · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Boonrat TassaneetrithepOffice for Research and Development, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, Thailand; United States Military Health Research Program, Walter Reed Army Institute of Research, Silver Spring, Maryland, United States of America.
Doreen TivonDepartment of Biochemistry and Molecular Pharmacology, New York University School of Medicine, New York, New York, United States of America.
James SwetnamDepartment of Biochemistry and Molecular Pharmacology, New York University School of Medicine, New York, New York, United States of America.
Nicos KarasavvasDepartment of Retrovirology, United States Army Medical Component, Armed Forces Research Institute of Medical Sciences, Bangkok Thailand.
Nelson L MichaelUnited States Military Health Research Program, Walter Reed Army Institute of Research, Silver Spring, Maryland, United States of America.
Jerome H KimUnited States Military Health Research Program, Walter Reed Army Institute of Research, Silver Spring, Maryland, United States of America.
Mary MarovichUnited States Military Health Research Program, Walter Reed Army Institute of Research, Silver Spring, Maryland, United States of America.
Timothy CardozoDepartment of Biochemistry and Molecular Pharmacology, New York University School of Medicine, New York, New York, United States of America.
New York University · USWalter Reed Army Institute of Research · USArmed Forces Research Institute of Medical Science · THMahidol University · TH

Funding

Combined cocaine and HIV vaccineDP1DA036478 · NIDA · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI CARDOZO, TIMOTHY J · 2013 to 2017
$4.7M
NIDA NIH HHS DP1 DA036478PHS HHS R01A1084119
6 · The paper itself

Abstract

The peptide segment of the second variable loop of HIV-1 spanning positions 166-181 harbors two functionally important sites. The first, spanning positions 179-181, engages the human α4β7 integrin receptor which is involved in T-cell gut-homing and may play a role in human immunodeficiency virus (HIV)-host cell interactions. The second, at positions 166-178, is a major target of anti-V2 antibodies elicited by the ALVAC/AIDSVAX vaccine used in the RV144 clinical trial. Notably, these two sites are directly adjacent, but do not overlap. Here, we report the identity of a second determinant of α4β7 binding located at positions 170-172 of the V2 loop. This segment - tripeptide QRV170-172- is located within the second site, yet functionally affects the first site. The absence of this segment abrogates α4β7 binding in peptides bearing the same sequence from position 173-185 as the V2 loops of the RV144 vaccines. However, peptides exhibiting V2 loop sequences from heterologous HIV-1 strains that include this QRV170-172 motif bind the α4β7 receptor on cells. Therefore, the peptide segment at positions 166-178 of the V2 loop of HIV-1 viruses appears to harbor a cryptic determinant of α4β7 binding. Prior studies show that the anti-V2 antibody response elicited by the RV144 vaccine, along with immune pressure inferred from a sieve analysis, is directed to this same region of the V2 loop. Accordingly, the anti-V2 antibodies that apparently reduced the risk of infection in the RV144 trial may have functioned by blocking α4β7-mediated HIV-host cell interactions via this cryptic determinant.

Indexed as

AIDS VaccinesAmino Acid SequenceAntigens, ViralBinding SitesCD4-Positive T-LymphocytesCD8-Positive T-LymphocytesCells, CulturedHIV-1HIV AntibodiesHIV Envelope Protein gp120HIV InfectionsHumansIntegrinsProtein BindingProtein FoldingProtein Structure, QuaternaryAIDS VaccinesAIDSVAXAntigens, Viralgp120 protein, Human immunodeficiency virus 1HIV AntibodiesHIV Envelope Protein gp120integrin alpha4beta7Integrins

Identifiers

PMID25265384
PMCPMC4180765
OpenAlexW1971170858

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.