Evidence map›Paper›PMID 25262022›Full record

ArticleThe Journal of biological chemistry2014

Semiquinone-induced maturation of Bacillus anthracis ribonucleotide reductase by a superoxide intermediate.

Gustav Berggren, Nicolas Duraffourg, Margareta Sahlin, Britt-Marie Sjöberg

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

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  6. Class Id ribonucleotide reductase utilizes a MnJournal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2019
    Article
  7. Redox-induced structural changes in the di-iron and di-manganese forms of Bacillus anthracis ribonucleotide reductase subunit NrdF suggest a mechanism for gating of radical access.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2019
    Article
  8. A Research-inspired biochemistry laboratory module-combining expression, purification, crystallization, structure-solving, and characterization of a flavodoxin-like protein.Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology · 2019
    Article
  9. Assembly of a heterodinuclear Mn/Fe cofactor is coupled to tyrosine-valine ether cross-link formation in the R2-like ligand-binding oxidase.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Gustav BerggrenDepartment of Biochemistry and Biophysics, Stockholm University SE-10691 Stockholm, Sweden and.
Nicolas DuraffourgLaboratoire de Chimie et Biologie des Métaux (UMR 5249), CEA-Grenoble, 17, rue des Martyrs, F-38057 Grenoble, France.
Margareta SahlinDepartment of Biochemistry and Biophysics, Stockholm University SE-10691 Stockholm, Sweden and.
Britt-Marie SjöbergDepartment of Biochemistry and Biophysics, Stockholm University SE-10691 Stockholm, Sweden and. Electronic address: britt-marie.sjoberg@dbb.su.se.
Stockholm University · SELaboratoire de Chimie et Biologie des Métaux · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ribonucleotide reductases (RNRs) catalyze the conversion of ribonucleotides to deoxyribonucleotides, and represent the only de novo pathway to provide DNA building blocks. Three different classes of RNR are known, denoted I-III. Class I RNRs are heteromeric proteins built up by α and β subunits and are further divided into different subclasses, partly based on the metal content of the β-subunit. In subclass Ib RNR the β-subunit is denoted NrdF, and harbors a manganese-tyrosyl radical cofactor. The generation of this cofactor is dependent on a flavodoxin-like maturase denoted NrdI, responsible for the formation of an active oxygen species suggested to be either a superoxide or a hydroperoxide. Herein we report on the magnetic properties of the manganese-tyrosyl radical cofactor of Bacillus anthracis NrdF and the redox properties of B. anthracis NrdI. The tyrosyl radical in NrdF is stabilized through its interaction with a ferromagnetically coupled manganese dimer. Moreover, we show through a combination of redox titration and protein electrochemistry that in contrast to hitherto characterized NrdIs, the B. anthracis NrdI is stable in its semiquinone form (NrdIsq) with a difference in electrochemical potential of ∼110 mV between the hydroquinone and semiquinone state. The under anaerobic conditions stable NrdIsq is fully capable of generating the oxidized, tyrosyl radical-containing form of Mn-NrdF when exposed to oxygen. This latter observation strongly supports that a superoxide radical is involved in the maturation mechanism, and contradicts the participation of a peroxide species. Additionally, EPR spectra on whole cells revealed that a significant fraction of NrdI resides in its semiquinone form in vivo, underscoring that NrdIsq is catalytically relevant.

Indexed as

Anti-Bacterial AgentsBacillus anthracisBacterial ProteinsCatalysisElectrodesElectron Spin Resonance SpectroscopyFree RadicalsMagneticsManganeseMetalsOxidation-ReductionOxygenQuinonesRibonucleoside Diphosphate ReductaseRibonucleotide ReductasesSpectrophotometry, UltravioletAnti-Bacterial AgentsBacterial ProteinsFree RadicalsManganeseMetalsNrdF protein, bacteriaOxygenQuinonesRibonucleoside Diphosphate ReductaseRibonucleotide ReductasesSuperoxidesBacillusCyclic VoltammetryFree RadicalsManganeseMaturaseNrdFNrdIRibonucleotide ReductaseSemiquinoneSuperoxide Ion

Identifiers

PMID25262022
PMCPMC4231672
OpenAlexW1968893393

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.