Evidence map›Paper›PMID 25261014›Full record

ArticleEuropean biophysics journal : EBJ2014

The TFE-induced transient native-like structure of the intrinsically disordered σ₄⁷⁰ domain of Escherichia coli RNA polymerase.

Piotr Kaczka, Maria Winiewska, Igor Zhukov, Bożenna Rempoła, Krystyna Bolewska, Tomasz Łoziński, Andrzej Ejchart, Anna Poznańska, Kazimierz L Wierzchowski, Jarosław Poznański

Abstract read
In one paragraph

Article in European biophysics journal : EBJ, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Piotr KaczkaInstitute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawińskiego 5a, 02-106, Warsaw, Poland.
Maria Winiewska
Igor Zhukov
Bożenna Rempoła
Krystyna Bolewska
Tomasz Łoziński
Andrzej Ejchart
Anna Poznańska
Kazimierz L Wierzchowski
Jarosław Poznański

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The transient folding of domain 4 of an E. coli RNA polymerase σ⁷⁰ subunit (rECσ₄⁷⁰) induced by an increasing concentration of 2,2,2-trifluoroethanol (TFE) in an aqueous solution was monitored by means of CD and heteronuclear NMR spectroscopy. NMR data, collected at a 30% TFE, allowed the estimation of the population of a locally folded rECσ₄⁷⁰ structure (CSI descriptors) and of local backbone dynamics ((15)N relaxation). The spontaneous organization of the helical regions of the initially unfolded protein into a TFE-induced 3D structure was revealed from structural constraints deduced from (15)N- to (13)C-edited NOESY spectra. In accordance with all the applied criteria, three highly populated α-helical regions, separated by much more flexible fragments, form a transient HLHTH motif resembling those found in PDB structures resolved for homologous proteins. All the data taken together demonstrate that TFE induces a transient native-like structure in the intrinsically disordered protein.

Indexed as

Amino Acid MotifsDNA-Directed RNA PolymerasesDose-Response Relationship, DrugEscherichia coliIntrinsically Disordered ProteinsMolecular Dynamics SimulationMovementProtein FoldingProtein Structure, TertiaryTrifluoroethanolDNA-Directed RNA PolymerasesIntrinsically Disordered ProteinsTrifluoroethanol

Identifiers

PMID25261014
PMCPMC4236625

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.