Evidence map›Paper›PMID 25258367›Full record

ArticleAJNR. American journal of neuroradiology2015

MRI texture analysis predicts p53 status in head and neck squamous cell carcinoma.

M Dang, J T Lysack, T Wu, T W Matthews, S P Chandarana, N T Brockton, P Bose, G Bansal, H Cheng, J R Mitchell and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in AJNR. American journal of neuroradiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 90 citations in OpenAlex.

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  9. Construction of an enhanced computed tomography radiomics model for non-invasively predicting granzyme A in head and neck squamous cell carcinoma by machine learning.European archives of oto-rhino-laryngology : official journal of the European Federation of Oto-Rhino-Laryngological Societies (EUFOS) : affiliated with the German Society for Oto-Rhino-Laryngology - Head and Neck Surgery · 2023
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  17. [Advances in head and neck squamous cell cancer research based on radiomics].Lin chuang er bi yan hou tou jing wai ke za zhi = Journal of clinical otorhinolaryngology head and neck surgery · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

M DangDepartment of Radiology (M.D., J.T.L.), University of Calgary, Calgary, Alberta, Canada.
J T LysackDepartment of Radiology (M.D., J.T.L.), University of Calgary, Calgary, Alberta, Canada.
T WuSchool of Computing, Informatics, Decision Systems Engineering (G.B., T.W.), Arizona State University, Tempe, Arizona.
T W MatthewsFrom the Section of Otolaryngology-Head and Neck Surgery (T.W.M., S.P.C., P.B., J.C.D.).
S P ChandaranaFrom the Section of Otolaryngology-Head and Neck Surgery (T.W.M., S.P.C., P.B., J.C.D.).
N T BrocktonDepartment of Population Health Research (N.T.B.), Alberta Health Services, Calgary, Alberta, Canada.
P BoseFrom the Section of Otolaryngology-Head and Neck Surgery (T.W.M., S.P.C., P.B., J.C.D.).
G BansalSchool of Computing, Informatics, Decision Systems Engineering (G.B., T.W.), Arizona State University, Tempe, Arizona.
H ChengDepartment of Radiology (H.C., J.R.M.), Mayo Clinic College of Medicine, Scottsdale, Arizona.
J R MitchellDepartment of Radiology (H.C., J.R.M.), Mayo Clinic College of Medicine, Scottsdale, Arizona.
J C DortFrom the Section of Otolaryngology-Head and Neck Surgery (T.W.M., S.P.C., P.B., J.C.D.) jdort@ucalgary.ca.
University of Calgary · CAMayo Clinic in Arizona · USAlberta Health Services · CAArizona State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

background and purposeHead and neck cancer is common, and understanding the prognosis is an important part of patient management. In addition to the Tumor, Node, Metastasis staging system, tumor biomarkers are becoming more useful in understanding prognosis and directing treatment. We assessed whether MR imaging texture analysis would correctly classify oropharyngeal squamous cell carcinoma according to p53 status. MATERIALS AND

methodsA cohort of 16 patients with oropharyngeal squamous cell carcinoma was prospectively evaluated by using standard clinical, histopathologic, and imaging techniques. Tumors were stained for p53 and scored by an anatomic pathologist. Regions of interest on MR imaging were selected by a neuroradiologist and then analyzed by using our 2D fast time-frequency transform tool. The quantified textures were assessed by using the subset-size forward-selection algorithm in the Waikato Environment for Knowledge Analysis. Features found to be significant were used to create a statistical model to predict p53 status. The model was tested by using a Bayesian network classifier with 10-fold stratified cross-validation.

resultsFeature selection identified 7 significant texture variables that were used in a predictive model. The resulting model predicted p53 status with 81.3% accuracy (P < .05). Cross-validation showed a moderate level of agreement (κ = 0.625).

conclusionsThis study shows that MR imaging texture analysis correctly predicts p53 status in oropharyngeal squamous cell carcinoma with ∼80% accuracy. As our knowledge of and dependence on tumor biomarkers expand, MR imaging texture analysis warrants further study in oropharyngeal squamous cell carcinoma and other head and neck tumors.

Indexed as

AdultBayes TheoremBiomarkers, TumorCarcinoma, Squamous CellFemaleHead and Neck NeoplasmsHumansImage Interpretation, Computer-AssistedMagnetic Resonance ImagingMaleMiddle AgedOropharyngeal NeoplasmsSquamous Cell Carcinoma of Head and NeckTumor Suppressor Protein p53Biomarkers, TumorTumor Suppressor Protein p53

Identifiers

PMID25258367
PMCPMC7965921
OpenAlexW2120254749

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.