Evidence map›Paper›PMID 25258318›Full record

ArticleThe Journal of biological chemistry2014

Loss of Ypk1, the yeast homolog to the human serum- and glucocorticoid-induced protein kinase, accelerates phospholipase B1-mediated phosphatidylcholine deacylation.

Beth A Surlow, Benjamin M Cooley, Patrick G Needham, Jeffrey L Brodsky, Jana Patton-Vogt

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Phospholipid turnover and acyl chain remodeling in the yeast ER.Biochimica et biophysica acta. Molecular and cell biology of lipids · 2020
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Beth A SurlowFrom the Department of Biological Sciences, Duquesne University, Pittsburgh, Pennsylvania 15282 and.
Benjamin M CooleyFrom the Department of Biological Sciences, Duquesne University, Pittsburgh, Pennsylvania 15282 and.
Patrick G Needhamthe Department of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania 15260.
Jeffrey L Brodskythe Department of Biological Sciences, University of Pittsburgh, Pittsburgh, Pennsylvania 15260.
Jana Patton-VogtFrom the Department of Biological Sciences, Duquesne University, Pittsburgh, Pennsylvania 15282 and pattonvogt@duq.edu.
Duquesne University · USUniversity of Pittsburgh · US

Funding

Single Nephron and MetabolomicsP30DK079307 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KLEYMAN, THOMAS R · 2008 to 2022
$13.4M
ER Associated Degradation of Membrane Proteins in YeastR01GM075061 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BRODSKY, JEFFREY L. · 2006 to 2019
$3.2M
The Role of Phospholipid Turnover in Membrane Protein FunctionR15GM104876 · NIGMS · DUQUESNE UNIVERSITY · PI VOGT, JANA L · 2013 to 2024
$1.3M
NIDDK NIH HHS P30 DK079307NIDDK NIH HHS P30 DK79307NIGMS NIH HHS R01 GM075061NIGMS NIH HHS R01 GM75061NIGMS NIH HHS R15 GM104876
6 · The paper itself

Abstract

Ypk1, the yeast homolog of the human serum- and glucocorticoid-induced kinase (Sgk1), affects diverse cellular activities, including sphingolipid homeostasis. We now report that Ypk1 also impacts the turnover of the major phospholipid, phosphatidylcholine (PC). Pulse-chase radiolabeling reveals that a ypk1Δ mutant exhibits increased PC deacylation and glycerophosphocholine production compared with wild type yeast. Deletion of PLB1, a gene encoding a B-type phospholipase that hydrolyzes PC, in a ypk1Δ mutant curtails the increased PC deacylation. In contrast to previous data, we find that Plb1 resides in the ER and in the medium. Consistent with a link between Ypk1 and Plb1, the levels of both Plb1 protein and PLB1 message are elevated in a ypk1Δ strain compared with wild type yeast. Furthermore, deletion of PLB1 in a ypk1Δ mutant exacerbates phenotypes associated with loss of YPK1, including slowed growth and sensitivity to cell wall perturbation, suggesting that increased Plb1 activity buffers against the loss of Ypk1. Because Plb1 lacks a consensus phosphorylation site for Ypk1, we probed other processes under the control of Ypk1 that might be linked to PC turnover. Inhibition of sphingolipid biosynthesis by the drug myriocin or through utilization of a lcb1-100 mutant results in increased PLB1 expression. Furthermore, we discovered that the increase in PLB1 expression observed upon inhibition of sphingolipid synthesis or loss of Ypk1 is under the control of the Crz1 transcription factor. Taken together, these results suggest a functional interaction between Ypk1 and Plb1 in which altered sphingolipid metabolism up-regulates PLB1 expression via Crz1.

Indexed as

AcetylationAllelesCholineDNA-Binding ProteinsFatty Acids, MonounsaturatedGene DeletionGene Expression ProfilingGene Expression Regulation, FungalGlycerylphosphorylcholineGlycogen Synthase Kinase 3HomeostasisHydrolysisLipidsLysophospholipaseMembrane ProteinsMutationCholineCRZ1 protein, S cerevisiaeDNA-Binding ProteinsFatty Acids, MonounsaturatedGlycerylphosphorylcholineGlycogen Synthase Kinase 3LipidsLysophospholipaseMCK1 protein, S cerevisiaeMembrane ProteinsPhosphatidylcholinesPLB1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSphingolipidsthermozymocidinTranscription FactorsGlycerophosphocholinePhosphatidylcholinePhospholipasePhospholipid TurnoverPLB1Protein KinaseSGK1SphingolipidYeast

Identifiers

PMID25258318
PMCPMC4223355
OpenAlexW1990440966

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.