ArticleBMC plant biology2014
Detecting SNPs underlying domestication-related traits in soybean.
Article in BMC plant biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
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Who cites it
10 citing papers in PubMed, 21 citations in OpenAlex.
- Limited genetic diversity found among genotypes of the Entada landrace (Frontiers in plant science · 2024Article
- Population structure and genetic diversity characterization of soybean for seed longevity.PloS one · 2022Article
- TheFrontiers in plant science · 2022Article
- Population Genetics Revealed a New Locus That Underwent Positive Selection in Barley.International journal of molecular sciences · 2019Article
- Review
- Neurogenomics and the role of a large mutational target on rapid behavioral change.Biology direct · 2016Article
- Molecular phylogeny and dynamic evolution of disease resistance genes in the legume family.BMC genomics · 2016Article
- Transcript Polymorphism Rates in Soybean Seed Tissue Are Increased in a Single Transformant ofInternational journal of plant genomics · 2016Article
- Article
- SNP identification and marker assay development for high-throughput selection of soybean cyst nematode resistance.BMC genomics · 2015Article
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Authors and funding
6 authors at 5 institutions in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundCultivated soybean (Glycine max) experienced a severe genetic bottleneck during its domestication and a further loss in diversity during its subsequent selection. Here, a panel of 65 wild (G. soja) and 353 cultivated accessions was genotyped at 552 single-nucleotide polymorphism loci to search for signals of selection during and after domestication.
resultsThe wild and cultivated populations were well differentiated from one another. Application of the Fst outlier test revealed 64 loci showing evidence for selection. Of these, 35 related to selection during domestication, while the other 29 likely gradually became monomorphic as a result of prolonged selection during post domestication. Two of the SNP locus outliers were associated with testa color.
conclusionsIdentifying genes controlling domestication-related traits is important for maintaining the diversity of crops. SNP locus outliers detected by a combined forward genetics and population genetics approach can provide markers with utility for the conservation of wild accessions and for trait improvement in the cultivated genepool.
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