Evidence map›Paper›PMID 25257467›Full record

ArticleCell research2014

Plant homeodomain finger protein 2 promotes bone formation by demethylating and activating Runx2 for osteoblast differentiation.

Hye-Jin Kim, Jong-Wan Park, Kyoung-Hwa Lee, Haejin Yoon, Dong Hoon Shin, Uk-Il Ju, Seung Hyeok Seok, Seung Hyeon Lim, Zang Hee Lee, Hong-Hee Kim and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed, 2 pooled it
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 2 syntheses or guidelines pooled it, 53 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
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  7. Article
  8. Article
  9. Discovery and structural studies of histone demethylases.Frontiers in epigenetics and epigenomics · 2025
    Review
  10. Review
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. KDM7 Demethylases: Regulation, Function and Therapeutic Targeting.Advances in experimental medicine and biology · 2023
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Hye-Jin KimDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul 110-799, Republic of Korea.
Jong-Wan Park1] Department of Biomedical Sciences, Seoul National University College of Medicine, Seoul 110-799, Republic of Korea [2] Ischemic/Hypoxic Disease Institute, Seoul National University College of Medicine, Seoul 110-799, Republic of Korea [3] Cancer Research Institute, Seoul National University College of Medicine, Seoul 110-799, Republic of Korea.
Kyoung-Hwa Lee1] Department of Biomedical Sciences, Seoul National University College of Medicine, Seoul 110-799, Republic of Korea [2] Ischemic/Hypoxic Disease Institute, Seoul National University College of Medicine, Seoul 110-799, Republic of Korea.
Haejin YoonDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul 110-799, Republic of Korea.
Dong Hoon Shin1] Department of Biomedical Sciences, Seoul National University College of Medicine, Seoul 110-799, Republic of Korea [2] Ischemic/Hypoxic Disease Institute, Seoul National University College of Medicine, Seoul 110-799, Republic of Korea.
Uk-Il JuDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul 110-799, Republic of Korea.
Seung Hyeok SeokDepartment of Microbiology and Immunology, Seoul National University College of Medicine, Seoul 110-799, Republic of Korea.
Seung Hyeon LimInstitute for Experimental Animals, Seoul National University College of Medicine, Seoul 110-799, Republic of Korea.
Zang Hee LeeDepartment of Cell and Developmental Biology, Seoul National University School of Dentistry, Seoul 110-749, Republic of Korea.
Hong-Hee KimDepartment of Cell and Developmental Biology, Seoul National University School of Dentistry, Seoul 110-749, Republic of Korea.
Yang-Sook Chun1] Department of Biomedical Sciences, Seoul National University College of Medicine, Seoul 110-799, Republic of Korea [2] Ischemic/Hypoxic Disease Institute, Seoul National University College of Medicine, Seoul 110-799, Republic of Korea.
Seoul National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plant homeodomain finger protein 2 (PHF2), which contains a plant homeodomain and a Jumonji-C domain, is an epigenetic regulator that demethylates lysine 9 in histone 3 (H3K9me2). On the other hand, runt-related transcription factor 2 (Runx2) plays essential roles in bone development and regeneration. Given previous reports that the PHF2 mutation can cause dwarfism in mice and that PHF2 expression is correlated with that of Runx2 in differentiating thymocytes, we investigated whether PHF2 regulates Runx2-mediated bone formation. Overexpression of PHF2 facilitated bone development in newborn mice, and viral shRNA-mediated knockdown of PHF2 delayed calvarial bone regeneration in adult rats. In primary osteoblasts and C2C12 precursor cells, PHF2 enhances osteoblast differentiation by demethylating Runx2, while suppressor of variegation 3-9 homolog 1 (SUV39H1) inhibits bone formation by methylating it. The PHF2-Runx2 interaction is mediated by the Jumonji-C and Runt domains of the two proteins, respectively. The interaction between Runx2 and osteocalcin promoter is regulated by the methylation status of Runx2, i.e., the interaction is augmented when Runx2 is demethylated. Our results suggest that SUV39H1 and PHF2 reciprocally regulate osteoblast differentiation by modulating Runx2-driven transcription at the post-translational level. This study may provide a theoretical basis for the development of new therapeutic modalities for patients with impaired bone development or delayed fracture healing.

Indexed as

Cell DifferentiationAnimalsBone RegenerationCells, CulturedCore Binding Factor Alpha 1 SubunitDNA MethylationFemaleHistone DemethylasesHomeodomain ProteinsMaleMethyltransferasesMiceMice, Inbred C57BLMice, TransgenicOsteoblastsOsteocalcinCore Binding Factor Alpha 1 SubunitHistone DemethylasesHomeodomain ProteinsMethyltransferasesOsteocalcinPHF2 protein, mouseRepressor ProteinsRunx2 protein, mouseSuv39h1 protein, mouse

Identifiers

PMID25257467
PMCPMC4185351
OpenAlexW2051833983

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.