Evidence map›Paper›PMID 25257018›Full record

ArticleMicrobiologyOpen2014

The putative oligosaccharide translocase SypK connects biofilm formation with quorum signaling in Vibrio fischeri.

Tim Miyashiro, Dane Oehlert, Valerie A Ray, Karen L Visick, Edward G Ruby

Open access · goldAbstract read
In one paragraph

Article in MicrobiologyOpen, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.2field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. A single point mutation is sufficient to driveJournal of bacteriology · 2025
    Article
  3. Article
  4. Journal of bacteriology · 2024
    Review
  5. Article
  6. Article
  7. Motility of Vibrio spp.: regulation and controlling strategies.Applied microbiology and biotechnology · 2020
    Review
  8. Article
  9. Article
  10. Tools for Rapid Genetic Engineering of Vibrio fischeri.Applied and environmental microbiology · 2018
    Article
  11. "In-Group" Communication in MarineFrontiers in cellular and infection microbiology · 2018
    Review
  12. Article
  13. Article
  14. Article
  15. Microbial Surface Colonization and Biofilm Development in Marine Environments.Microbiology and molecular biology reviews : MMBR · 2016
    Review
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Tim MiyashiroDepartment of Biochemistry and Molecular Biology, Eberly College of Science, The Pennsylvania State University, University Park, Pennsylvania, 16802; Department of Medical Microbiology and Immunology, University of Wisconsin School of Medicine and Public Health, Madison, Wisconsin, 53706.
Dane Oehlert
Valerie A Ray
Karen L Visick
Edward G Ruby
University of Wisconsin–Madison · USLoyola University Medical Center · US

Funding

Vibrio fischeri as a Model for Bacterial ColonizationR37AI050661 · NIAID · UNIVERSITY OF HAWAII AT MANOA · PI MARGARET J MC FALL-NGAI, Edward G Ruby · 2018 to 2026
$5.4M
Vibrio fischeri as a model of Bacterial ColonizationR01AI050661 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI MC FALL-NGAI, MARGARET J, RUBY, EDWARD G · 2002 to 2016
$5.0M
Vibrio Virulence Determinants in a Benign ColonizationR01OD011024 · OD · UNIVERSITY OF WISCONSIN-MADISON · PI MC FALL-NGAI, MARGARET J, RUBY, EDWARD G · 2012 to 2020
$3.9M
REQUIREMENTS FOR BACTERIAL COLONIZATION OF ANIMAL TISSUER01GM059690 · NIGMS · LOYOLA UNIVERSITY CHICAGO · PI VISICK, KAREN L · 2000 to 2013
$3.4M
Resistance and resiliency in a natural host-microbe symbiosisR01GM099507 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI RUBY, EDWARD G · 2012 to 2015
$1.4M
Analysis of quorum-signaling crosstalk within the squid-vibrio symbiosisR00GM097032 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI MIYASHIRO, TIMOTHY · 2013 to 2015
$743k
NIAID NIH HHS R37 AI050661NIGMS NIH HHS GM 059690NIGMS NIH HHS GM 099507NIGMS NIH HHS R00 GM 097032NIGMS NIH HHS R00 GM097032NIGMS NIH HHS R01 GM059690NIGMS NIH HHS R01 GM099507NIH HHS OD 011024NIH HHS R01 OD011024
6 · The paper itself

Abstract

Quorum signaling (QS) describes how bacteria can use small signaling molecules (autoinducers) to coordinate group-level behaviors. In Vibrio fischeri, QS is achieved through a complex regulatory network that ultimately controls bioluminescence, motility, and host colonization. We conducted a genetic screen focused on qrr1, which encodes a small regulatory RNA that is necessary for the core quorum-signaling cascade to transduce autoinducer information into cellular responses. We isolated unique mutants with a transposon inserted into one of two genes within the syp locus, which is involved in biofilm formation. We found that overexpression of sypK, which encodes a putative oligosaccharide translocase, is sufficient to activate qrr1, and, in addition, this effect appears to depend on the kinase activity of the sensor LuxQ. Consistent with the established model for QS in V. fischeri, enhanced expression of qrr1 by the overexpression of sypK resulted in reduced bioluminescence and increased motility. Finally, we found that induction of the syp locus by overexpression of sypG was sufficient to activate qrr1 levels. Together, our results show how conditions that promote biofilm formation impact the quorum-signaling network in V. fischeri, and further highlight the integrated nature of the regulatory circuits involved in complex bacterial behaviors.

Indexed as

BiofilmsQuorum SensingAliivibrio fischeriAnimalsBacterial ProteinsBiological TransportGene Expression Regulation, BacterialHexosyltransferasesMembrane ProteinsOligosaccharidesRepressor ProteinsTrans-ActivatorsBacterial Proteinsdolichyl-diphosphooligosaccharide - protein glycotransferaseHexosyltransferasesLuxR autoinducer binding proteinsMembrane ProteinsOligosaccharidesRepressor ProteinsTrans-ActivatorsBiofilmgene regulationmolecular geneticsquorum sensing

Identifiers

PMID25257018
PMCPMC4263508
OpenAlexW2075082458

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.