Evidence map›Paper›PMID 25256396›Full record

ArticleViruses2014

Filovirus RefSeq entries: evaluation and selection of filovirus type variants, type sequences, and names.

Jens H Kuhn, Kristian G Andersen, Yīmíng Bào, Sina Bavari, Stephan Becker, Richard S Bennett, Nicholas H Bergman, Olga Blinkova, Steven Bradfute, J Rodney Brister and 66 more

Abstract readLetter
PubMed Full text at PMC Publisher
In one paragraph

Article in Viruses, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed.

  1. Article
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  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Neglected filoviruses.FEMS microbiology reviews · 2016
    Review
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

76 authors.

Jens H KuhnIntegrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Fort Detrick, Frederick, MD 21702, USA. kuhnjens@mail.nih.gov.
Kristian G AndersenFAS Center for Systems Biology, Harvard University, Cambridge, MA 02138, USA. kandersen@oeb.harvard.edu.
Yīmíng BàoInformation Engineering Branch, National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA. bao@ncbi.nlm.nih.gov.
Sina BavariUnited States Army Medical Research Institute of Infectious Diseases, Fort Detrick, Frederick, MD 21702, USA. sina.bavari.civ@mail.mil.
Stephan BeckerInstitut für Virologie, Philipps-Universität Marburg, 35043 Marburg, Germany. becker@staff.uni-marburg.de.
Richard S BennettNational Biodefense Analysis and Countermeasures Center, Fort Detrick, Frederick, MD 21702, USA. richard.bennett@nbacc.dhs.gov.
Nicholas H BergmanNational Biodefense Analysis and Countermeasures Center, Fort Detrick, Frederick, MD 21702, USA. nicholas.bergman@nbacc.dhs.gov.
Olga BlinkovaInformation Engineering Branch, National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA. olga.blinkova@nih.gov.
Steven BradfuteUniversity of New Mexico, Albuquerque, NM 87131, USA. steven_bradfute@yahoo.com.
J Rodney BristerInformation Engineering Branch, National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA. jamesbr@ncbi.nlm.nih.gov.
Alexander BukreyevDepartment of Pathology and Galveston National Laboratory, University of Texas Medical Branch, Galveston, TX 77555, USA. alexander.bukreyev@utmb.edu.
Kartik ChandranDepartment of Microbiology and Immunology, Albert Einstein College of Medicine, Bronx, NY 10461, USA. kartik.chandran@einstein.yu.edu.
Alexander A ChepurnovIntegrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Fort Detrick, Frederick, MD 21702, USA. alexa.che.purnov@gmail.com.
Robert A DaveyIntegrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Fort Detrick, Frederick, MD 21702, USA. rdavey@txbiomed.org.
Ralf G DietzgenIntegrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Fort Detrick, Frederick, MD 21702, USA. r.dietzgen@uq.edu.au.
Norman A DoggettIntegrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Fort Detrick, Frederick, MD 21702, USA. doggett@lanl.gov.
Olga DolnikInstitut für Virologie, Philipps-Universität Marburg, 35043 Marburg, Germany. Dolnik@staff.uni-marburg.de.
John M DyeUnited States Army Medical Research Institute of Infectious Diseases, Fort Detrick, Frederick, MD 21702, USA. john.m.dye1.civ@mail.mil.
Sven EnterleinIntegrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Fort Detrick, Frederick, MD 21702, USA. sven.enterlein@gmail.com.
Paul W FenimoreIntegrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Fort Detrick, Frederick, MD 21702, USA. paulf@lanl.gov.
Pierre FormentyIntegrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Fort Detrick, Frederick, MD 21702, USA. formentyp@who.int.
Alexander N FreibergDepartment of Pathology and Galveston National Laboratory, University of Texas Medical Branch, Galveston, TX 77555, USA. anfreibe@utmb.edu.
Robert F GarryIntegrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Fort Detrick, Frederick, MD 21702, USA. steven_bradfute@yahoo.com.
Nicole L GarzaUnited States Army Medical Research Institute of Infectious Diseases, Fort Detrick, Frederick, MD 21702, USA. Nicole.l.lackemeyer.ctr@mail.mil.
Stephen K GireFAS Center for Systems Biology, Harvard University, Cambridge, MA 02138, USA. sgire@oeb.harvard.edu.
Jean-Paul GonzalezIntegrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Fort Detrick, Frederick, MD 21702, USA. : jpgonzalez@metabiota.com.
Anthony GriffithsIntegrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Fort Detrick, Frederick, MD 21702, USA. agriffiths@txbiomed.org.
Christian T HappiIntegrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Fort Detrick, Frederick, MD 21702, USA. chappi@hsph.harvard.edu.
Lisa E HensleyIntegrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Fort Detrick, Frederick, MD 21702, USA. lisa.hensley@nih.gov.
Andrew S HerbertUnited States Army Medical Research Institute of Infectious Diseases, Fort Detrick, Frederick, MD 21702, USA. anderw.s.herbert.ctr@mail.mil.
Michael C HeveyNational Biodefense Analysis and Countermeasures Center, Fort Detrick, Frederick, MD 21702, USA. michael.hevey@nbacc.dhs.gov.
Thomas HoenenIntegrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Fort Detrick, Frederick, MD 21702, USA. kartik.chandran@einstein.yu.edu.
Anna N HonkoIntegrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Fort Detrick, Frederick, MD 21702, USA. anna.honko@nih.gov.
Georgy M IgnatyevFAS Center for Systems Biology, Harvard University, Cambridge, MA 02138, USA. g.m.ignatyev@microgen.ru.
Peter B JahrlingIntegrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Fort Detrick, Frederick, MD 21702, USA. jahrlingp@niaid.nih.gov.
Joshua C JohnsonIntegrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Fort Detrick, Frederick, MD 21702, USA. joshua.johnson@nih.gov.
Karl M JohnsonFAS Center for Systems Biology, Harvard University, Cambridge, MA 02138, USA. microcaddis@gmail.com.
Jason KindrachukIntegrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Fort Detrick, Frederick, MD 21702, USA. kindrachuk.kenneth@nih.gov.
Hans-Dieter KlenkInstitut für Virologie, Philipps-Universität Marburg, 35043 Marburg, Germany. klenk@mailer.uni-marburg.de.
Gary KobingerFAS Center for Systems Biology, Harvard University, Cambridge, MA 02138, USA. gary.kobinger@phac-aspc.gc.ca.
Tadeusz J KochelNational Biodefense Analysis and Countermeasures Center, Fort Detrick, Frederick, MD 21702, USA. tadeusz.kochel@nbacc.dhs.gov.
Matthew G LackemeyerIntegrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Fort Detrick, Frederick, MD 21702, USA. matthew.lackemeyer@nih.gov.
Daniel F LacknerNational Biodefense Analysis and Countermeasures Center, Fort Detrick, Frederick, MD 21702, USA. daniel.lackner@nbacc.dhs.gov
Eric M LeroyFAS Center for Systems Biology, Harvard University, Cambridge, MA 02138, USA. eric.leroy@ird.fr.
Mark S LeverFAS Center for Systems Biology, Harvard University, Cambridge, MA 02138, USA. mslever@mail.dstl.gov.uk.
Elke MühlbergerFAS Center for Systems Biology, Harvard University, Cambridge, MA 02138, USA. muehlber@bu.edu.
Sergey V NetesovFAS Center for Systems Biology, Harvard University, Cambridge, MA 02138, USA. nauka@nsu.ru.
Gene G OlingerIntegrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Fort Detrick, Frederick, MD 21702, USA. gene.olinger@nih.gov.
Sunday A OmilabuFAS Center for Systems Biology, Harvard University, Cambridge, MA 02138, USA. steven_bradfute@yahoo.com.
Gustavo PalaciosUnited States Army Medical Research Institute of Infectious Diseases, Fort Detrick, Frederick, MD 21702, USA. gustavo.f.palacios.ctr@us.army.mil.
Rekha G PanchalUnited States Army Medical Research Institute of Infectious Diseases, Fort Detrick, Frederick, MD 21702, USA. rekha.g.panchal.civ@mail.mil.
Daniel J ParkFAS Center for Systems Biology, Harvard University, Cambridge, MA 02138, USA. dpark@broadinstitute.org.
Jean L PattersonIntegrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Fort Detrick, Frederick, MD 21702, USA. jpatters@txbiomed.org.
Janusz T PaweskaFAS Center for Systems Biology, Harvard University, Cambridge, MA 02138, USA. kartik.chandran@einstein.yu.edu.
Clarence J PetersDepartment of Pathology and Galveston National Laboratory, University of Texas Medical Branch, Galveston, TX 77555, USA. cjpeters@UTMB.EDU.
James PettittIntegrated Research Facility at Fort Detrick, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Fort Detrick, Frederick, MD 21702, USA. james.pettitt@nih.gov.
Louise PittUnited States Army Medical Research Institute of Infectious Diseases, Fort Detrick, Frederick, MD 21702, USA. louise.pitt@us.army.mil.
Sheli R RadoshitzkyUnited States Army Medical Research Institute of Infectious Diseases, Fort Detrick, Frederick, MD 21702, USA. sheli.r.radoshitzky.ctr@mail.mil.
Elena I RyabchikovaInformation Engineering Branch, National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA. lenryab@yandex.com.
Erica Ollmann SaphireInformation Engineering Branch, National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA. erica@scripps.edu.
Pardis C SabetiFAS Center for Systems Biology, Harvard University, Cambridge, MA 02138, USA. pardis@broadinstitute.org.
Rachel SealfonInformation Engineering Branch, National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA. sealfon@gmail.com.
Aleksandr M ShestopalovNovosibirsk State University, Novosibirsk, Novosibirsk Region, Russia, 630090. shestopalov2@mail.ru
Sophie J SmitherFAS Center for Systems Biology, Harvard University, Cambridge, MA 02138, USA. SJSMITHER@mail.dstl.gov.uk.
Nancy J SullivanInformation Engineering Branch, National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA. njsull@mail.nih.gov.
Robert SwanepoelInformation Engineering Branch, National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA. bobswanepoel@gmail.com.
Ayato TakadaInformation Engineering Branch, National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA. atakada@czc.hokudai.ac.jp.
Jonathan S TownerInformation Engineering Branch, National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA. jit8@cdc.gov.
Guido van der GroenInformation Engineering Branch, National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA. steven_bradfute@yahoo.com.
Viktor E VolchkovInformation Engineering Branch, National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA. viktor.volchkov@inserm.fr.
Valentina A VolchkovaInformation Engineering Branch, National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA. valentina.volchkova@inserm.fr.
Victoria Wahl-JensenNational Biodefense Analysis and Countermeasures Center, Fort Detrick, Frederick, MD 21702, USA. victoria.jensen@nbacc.dhs.gov.
Travis K WarrenUnited States Army Medical Research Institute of Infectious Diseases, Fort Detrick, Frederick, MD 21702, USA. travis.k.warren.ctr@mail.mil.
Kelly L WarfieldInformation Engineering Branch, National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD 20894, USA. kartik.chandran@einstein.yu.edu.
Manfred WeidmannUnited States Army Medical Research Institute of Infectious Diseases, Fort Detrick, Frederick, MD 21702, USA. m.w.weidmann@stir.ac.uk.
Stuart T NicholIViral Special Pathogens Branch, Division of High-Consequence Pathogens Pathology, National Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, GA 30333, USA. stn1@cdc.gov.

Funding

Regulatory Compliance Core - Galveston National Laboratory BSL4 OperationsUC7AI094660 · NIAID · UNIVERSITY OF TEXAS MED BR GALVESTON · PI Gene Garrard Olinger · 2011 to 2026
$208.8M
Antibody immunotherapeutics for biodefense against Lassa virusR01AI104621 · NIAID · TULANE UNIVERSITY OF LOUISIANA · PI GARRY, ROBERT F · 2013 to 2017
$5.8M
Project 2. Expansion of Clinical Research Capacity at Kenema Government HospitalU19AI115589 · NIAID · TULANE UNIVERSITY OF LOUISIANA · PI SHAFFER, JEFFREY G · 2015 to 2019
$3.6M
Intramural NIH HHSNIAID NIH HHS HHSN272200700016INIAID NIH HHS R01 AI104621NIAID NIH HHS U19 AI115589NIAID NIH HHS UC7 AI094660World Health Organization 001
6 · The paper itself

Abstract

Sequence determination of complete or coding-complete genomes of viruses is becoming common practice for supporting the work of epidemiologists, ecologists, virologists, and taxonomists. Sequencing duration and costs are rapidly decreasing, sequencing hardware is under modification for use by non-experts, and software is constantly being improved to simplify sequence data management and analysis. Thus, analysis of virus disease outbreaks on the molecular level is now feasible, including characterization of the evolution of individual virus populations in single patients over time. The increasing accumulation of sequencing data creates a management problem for the curators of commonly used sequence databases and an entry retrieval problem for end users. Therefore, utilizing the data to their fullest potential will require setting nomenclature and annotation standards for virus isolates and associated genomic sequences. The National Center for Biotechnology Information's (NCBI's) RefSeq is a non-redundant, curated database for reference (or type) nucleotide sequence records that supplies source data to numerous other databases. Building on recently proposed templates for filovirus variant naming [<virus name> (<strain>)/<isolation host-suffix>/<country of sampling>/<year of sampling>/<genetic variant designation>-<isolate designation>], we report consensus decisions from a majority of past and currently active filovirus experts on the eight filovirus type variants and isolates to be represented in RefSeq, their final designations, and their associated sequences.

Indexed as

Databases, Nucleic AcidEvolution, MolecularFiloviridaeHumansSelection, Genetic

Identifiers

PMID25256396
PMCPMC4189044

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.