Evidence map›Paper›PMID 25254371›Full record

ArticlePLoS pathogens2014

Ontogeny of recognition specificity and functionality for the broadly neutralizing anti-HIV antibody 4E10.

Kathryn A K Finton, Della Friend, James Jaffe, Mesfin Gewe, Margaret A Holmes, H Benjamin Larman, Andrew Stuart, Kevin Larimore, Philip D Greenberg, Stephen J Elledge and 2 more

Abstract read
In one paragraph

Article in PLoS pathogens, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Article
  2. Review
  3. Defining and Studying B Cell Receptor and TCR Interactions.Journal of immunology (Baltimore, Md. : 1950) · 2023
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
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  10. Article
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  13. Article
  14. Article
  15. Article
  16. Article
  17. Germline-targeting immunogens.Immunological reviews · 2017
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Kathryn A K FintonDivision of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.
Della FriendDivision of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.
James JaffeDivision of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.
Mesfin GeweDivision of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.
Margaret A HolmesDivision of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.
H Benjamin LarmanDepartment of Genetics, Harvard University Medical School, and Division of Genetics, Howard Hughes Medical Institute, Brigham and Women's Hospital, Boston, Massachusetts, United States of America.
Andrew StuartSeattle Biomedical Research Institute, Seattle, Washington, United States of America.
Kevin LarimoreDepartment of Immunology, University of Washington, Seattle, Washington, United States of America.
Philip D GreenbergDepartment of Immunology, University of Washington, Seattle, Washington, United States of America; Department of Medicine, University of Washington, Seattle, Washington, United States of America; Program in Immunology, Cancer Research Division, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.
Stephen J ElledgeDepartment of Genetics, Harvard University Medical School, and Division of Genetics, Howard Hughes Medical Institute, Brigham and Women's Hospital, Boston, Massachusetts, United States of America.
Leonidas StamatatosSeattle Biomedical Research Institute, Seattle, Washington, United States of America; Department of Global Health, University of Washington, Seattle, Washington, United States of America.
Roland K StrongDivision of Basic Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America.

Funding

Structure/function studies of immunogen recognition by anti-HIV antibody b12P01AI094419 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI STAMATATOS, LEONIDAS · 2011 to 2015
$10.6M
TRAINING IN MOLECULAR BIOPHYSICST32GM008268 · NIGMS · UNIVERSITY OF WASHINGTON · PI KOLLMAN, JUSTIN M, ZHENG, NING · 1988 to 2023
$8.6M
Mechanisms of Murine Turmor Eradication by ImmunotherapyR01CA033084 · NCI · UNIVERSITY OF WASHINGTON · PI GREENBERG, PHILIP D · 1986 to 2017
$5.8M
NCI NIH HHS R01 CA033084NCI NIH HHS R01CA033084NIAID NIH HHS P01 AI094419NIAID NIH HHS P01AI094419NIGMS NIH HHS T32 GM008268NIGMS NIH HHS T32GM008268
6 · The paper itself

Abstract

The process of antibody ontogeny typically improves affinity, on-rate, and thermostability, narrows polyspecificity, and rigidifies the combining site to the conformer optimal for binding from the broader ensemble accessible to the precursor. However, many broadly-neutralizing anti-HIV antibodies incorporate unusual structural elements and recognition specificities or properties that often lead to autoreactivity. The ontogeny of 4E10, an autoreactive antibody with unexpected combining site flexibility, was delineated through structural and biophysical comparisons of the mature antibody with multiple potential precursors. 4E10 gained affinity primarily by off-rate enhancement through a small number of mutations to a highly conserved recognition surface. Controverting the conventional paradigm, the combining site gained flexibility and autoreactivity during ontogeny, while losing thermostability, though polyspecificity was unaffected. Details of the recognition mechanism, including inferred global effects due to 4E10 binding, suggest that neutralization by 4E10 may involve mechanisms beyond simply binding, also requiring the ability of the antibody to induce conformational changes distant from its binding site. 4E10 is, therefore, unlikely to be re-elicited by conventional vaccination strategies.

Indexed as

Antibody SpecificityAmino Acid SequenceAntibodies, MonoclonalBroadly Neutralizing AntibodiesCrystallography, X-RayHIV-1HIV AntibodiesHIV InfectionsHumansMolecular Sequence DataNeutralization TestsSequence Homology, Amino AcidSurface Plasmon Resonance4E10 monoclonal antibodyAntibodies, MonoclonalBroadly Neutralizing AntibodiesHIV Antibodies

Identifiers

PMID25254371
PMCPMC4177983

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.