Evidence map›Paper›PMID 25253688›Full record

ArticleThe Journal of biological chemistry2014

Structural and biochemical characterization of Chlamydia trachomatis hypothetical protein CT263 supports that menaquinone synthesis occurs through the futalosine pathway.

Michael L Barta, Keisha Thomas, Hongling Yuan, Scott Lovell, Kevin P Battaile, Vern L Schramm, P Scott Hefty

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 20 citations in OpenAlex.

  1. NQR as a target for new antibiotics.Frontiers in microbiology · 2025
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  7. Dynamic energy dependency ofThe Journal of biological chemistry · 2018
    Article
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  9. Future science OA · 2017
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Michael L BartaDepartment of Molecular Biosciences, University of Kansas, Lawrence, Kansas 66045.
Keisha ThomasDepartment of Biochemistry, Albert Einstein College of Medicine of Yeshiva University, Bronx, New York 10461.
Hongling YuanDepartment of Biochemistry, Albert Einstein College of Medicine of Yeshiva University, Bronx, New York 10461.
Scott LovellProtein Structure Laboratory, Del Shankel Structural Biology Center, University of Kansas, Lawrence, Kansas 66047, and.
Kevin P BattaileIndustrial Macromolecular Crystallography Association-Collaborative Access Team, Hauptman-Woodward Medical Research Institute, Argonne, Illinois 60439.
Vern L SchrammDepartment of Biochemistry, Albert Einstein College of Medicine of Yeshiva University, Bronx, New York 10461.
P Scott HeftyDepartment of Molecular Biosciences, University of Kansas, Lawrence, Kansas 66045,. Electronic address: pshefty@ku.edu.
University of Kansas · USYeshiva University · USHauptman-Woodward Medical Research Institute · US

Funding

TRAFFICKING OF THE PLASMA MEMBRANE CA2+-ATPASE TO RAFTSP20RR017708 · NCRR · UNIVERSITY OF KANSAS LAWRENCE · PI HOLYOAK, TODD · 2002 to 2011
$20.1M
TRANSITION STATE ANALYSIS OF ENZYMATIC REACTIONSR01GM041916 · NIGMS · YESHIVA UNIVERSITY · PI SCHRAMM, VERN L. · 1989 to 2023
$10.0M
Protein Structure Laboratory P30GM110761 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI HANZLIK, ROBERT P · 2014 to 2018
$5.6M
TRANSITION STATE ANALYSIS OF ENZYMATIC REACTIONSR37GM041916 · NIGMS · YESHIVA UNIVERSITY · PI SCHRAMM, VERN L. · 1998 to 2007
$3.5M
Protein Structure and FunctionP20GM103420 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI HANZLIK, ROBERT P · 2012 to 2012
$2.0M
Regulation of Virulence Gene Expression in ChlamydiaR01AI079083 · NIAID · UNIVERSITY OF KANSAS LAWRENCE · PI HEFTY, P SCOTT · 2010 to 2014
$1.8M
NCRR NIH HHS 5P20RR017708-10NCRR NIH HHS P20 RR017708NIAID NIH HHS AI079083NIAID NIH HHS R01 AI079083NIGMS NIH HHS 8 P20 GM103420-10NIGMS NIH HHS GM041916NIGMS NIH HHS P20 GM103420NIGMS NIH HHS P30 GM110761NIGMS NIH HHS R01 GM041916NIGMS NIH HHS R37 GM041916
6 · The paper itself

Abstract

The obligate intracellular human pathogen Chlamydia trachomatis is the etiological agent of blinding trachoma and sexually transmitted disease. Genomic sequencing of Chlamydia indicated this medically important bacterium was not exclusively dependent on the host cell for energy. In order for the electron transport chain to function, electron shuttling between membrane-embedded complexes requires lipid-soluble quinones (e.g. menaquionone or ubiquinone). The sources or biosynthetic pathways required to obtain these electron carriers within C. trachomatis are poorly understood. The 1.58Å crystal structure of C. trachomatis hypothetical protein CT263 presented here supports a role in quinone biosynthesis. Although CT263 lacks sequence-based functional annotation, the crystal structure of CT263 displays striking structural similarity to 5'-methylthioadenosine nucleosidase (MTAN) enzymes. Although CT263 lacks the active site-associated dimer interface found in prototypical MTANs, co-crystal structures with product (adenine) or substrate (5'-methylthioadenosine) indicate that the canonical active site residues are conserved. Enzymatic characterization of CT263 indicates that the futalosine pathway intermediate 6-amino-6-deoxyfutalosine (kcat/Km = 1.8 × 10(3) M(-1) s(-1)), but not the prototypical MTAN substrates (e.g. S-adenosylhomocysteine and 5'-methylthioadenosine), is hydrolyzed. Bioinformatic analyses of the chlamydial proteome also support the futalosine pathway toward the synthesis of menaquinone in Chlamydiaceae. This report provides the first experimental support for quinone synthesis in Chlamydia. Menaquinone synthesis provides another target for agents to combat C. trachomatis infection.

Indexed as

Amino Acid SequenceBacterial ProteinsCatalytic DomainChlamydia trachomatisComputational BiologyCrystallography, X-RayDeoxyadenosinesLigandsMolecular Sequence DataNucleosidesNucleotidasesProtein BindingProtein MultimerizationProtein Structure, TertiaryProteomeRecombinant Proteins5'-methylthioadenosineBacterial ProteinsDeoxyadenosinesfutalosineLigandsNucleosidesNucleotidasesProteomeRecombinant ProteinsS-AdenosylhomocysteineThionucleosidesVitamin K 2ChlamydiaCrystallographyEnzyme KineticsQuinoneRespiration

Identifiers

PMID25253688
PMCPMC4231696
OpenAlexW2087101885

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.