Evidence map›Paper›PMID 25253350›Full record

ArticleJournal of virology2014

Structurally similar woodchuck and human hepadnavirus core proteins have distinctly different temperature dependences of assembly.

Alexander A Kukreja, Joseph C-Y Wang, Elizabeth Pierson, David Z Keifer, Lisa Selzer, Zhenning Tan, Bogdan Dragnea, Martin F Jarrold, Adam Zlotnick

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In one paragraph

Article in Journal of virology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 27 citations in OpenAlex.

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  11. A molecular breadboard: Removal and replacement of subunits in a hepatitis B virus capsid.Protein science : a publication of the Protein Society · 2017
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Alexander A KukrejaDepartment of Molecular and Cellular Biochemistry, Indiana University, Bloomington, Indiana, USA.
Joseph C-Y WangDepartment of Molecular and Cellular Biochemistry, Indiana University, Bloomington, Indiana, USA.
Elizabeth PiersonDepartment of Chemistry, Indiana University, Bloomington, Indiana, USA.
David Z KeiferDepartment of Chemistry, Indiana University, Bloomington, Indiana, USA.
Lisa SelzerDepartment of Molecular and Cellular Biochemistry, Indiana University, Bloomington, Indiana, USA.
Zhenning TanDepartment of Molecular and Cellular Biochemistry, Indiana University, Bloomington, Indiana, USA.
Bogdan DragneaDepartment of Chemistry, Indiana University, Bloomington, Indiana, USA.
Martin F JarroldDepartment of Chemistry, Indiana University, Bloomington, Indiana, USA.
Adam ZlotnickDepartment of Molecular and Cellular Biochemistry, Indiana University, Bloomington, Indiana, USA azlotnic@indiana.edu.
Indiana University Bloomington · US

Funding

The Biophysics of Virus Capsid AssemblyR01AI077688 · NIAID · TRUSTEES OF INDIANA UNIVERSITY · PI ZLOTNICK, ADAM · 2009 to 2013
$1.5M
NIAID NIH HHS R01 AI077688NIAID NIH HHS R01-AI077688
6 · The paper itself

Abstract

unlabelledWoodchuck hepatitis virus (WHV), a close relative of human hepatitis B virus (HBV), has been a key model for disease progression and clinical studies. Sequences of the assembly domain of WHV and HBV core proteins (wCp149 and hCp149, respectively) have 65% identity, suggesting similar assembly behaviors. We report a cryo-electron microscopy (cryo-EM) structure of the WHV capsid at nanometer resolution and characterization of wCp149 assembly. At this resolution, the T=4 capsid structures of WHV and HBV are practically identical. In contrast to their structural similarity, wCp149 demonstrates enhanced assembly kinetics and stronger dimer-dimer interactions than hCp149: at 23 °C and at 100 mM ionic strength, the pseudocritical concentrations of assembly of wCp149 and hCp149 are 1.8 μM and 43.3 μM, respectively. Transmission electron microscopy reveals that wCp149 assembles into predominantly T=4 capsids with a sizeable population of larger, nonicosahedral structures. Charge detection mass spectrometry indicates that T=3 particles are extremely rare compared to the ∼ 5% observed in hCp149 reactions. Unlike hCp149, wCp149 capsid assembly is favorable over a temperature range of 4 °C to 37 °C; van't Hoff analyses relate the differences in temperature dependence to the high positive values for heat capacity, enthalpy, and entropy of wCp149 assembly. Because the final capsids are so similar, these findings suggest that free wCp149 and hCp149 undergo different structural transitions leading to assembly. The difference in the temperature dependence of wCp149 assembly may be related to the temperature range of its hibernating host. IMPORTANCE: In this paper, we present a cryo-EM structure of a WHV capsid showing its similarity to HBV. We then observe that the assembly properties of the two homologous proteins are very different. Unlike human HBV, the capsid protein of WHV has evolved to function in a nonhomeostatic environment. These studies yield insight into the interplay between core protein self-assembly and the host environment, which may be particularly relevant to plant viruses and viruses with zoonotic cycles involving insect vectors.

Indexed as

Amino Acid SequenceAnimalsCryoelectron MicroscopyHepadnaviridaeHepatitis B Virus, WoodchuckHumansMass SpectrometryMicroscopy, Electron, TransmissionModels, MolecularMolecular Sequence DataProtein ConformationSequence AlignmentTemperatureViral Core ProteinsVirionVirus AssemblyViral Core Proteins

Identifiers

PMID25253350
PMCPMC4249156
OpenAlexW2160280429

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.