Evidence map›Paper›PMID 25253287›Full record

ArticleGenes and immunity2014

Association of Toll-like receptor polymorphisms with HIV status in North Americans.

B Willie, N B Hall, C M Stein, R J Jurevic, A Weinberg, R K Mehlotra, P A Zimmerman

Open access · greenAbstract read
In one paragraph

Article in Genes and immunity, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 29 citations in OpenAlex.

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  13. CCR2, CCR5, and CXCL12 variation and HIV/AIDS in Papua New Guinea.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2015
    Article
  14. Article
  15. A preliminary assessment ofPapua and New Guinea medical journal
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

B WillieCenter for Global Health and Diseases, Case Western Reserve University School of Medicine, Cleveland, OH, USA.
N B HallDepartment of Epidemiology and Biostatistics, Case Western Reserve University, Cleveland, OH, USA.
C M Stein1] Department of Epidemiology and Biostatistics, Case Western Reserve University, Cleveland, OH, USA [2] Center for Proteomics and Bioinformatics, Case Western Reserve University School of Medicine, Cleveland, OH, USA.ORCID 0000000297635023
R J JurevicDepartment of Biological Sciences, Case Western Reserve University School of Dental Medicine, Cleveland, OH, USA.
A WeinbergDepartment of Biological Sciences, Case Western Reserve University School of Dental Medicine, Cleveland, OH, USA.
R K MehlotraCenter for Global Health and Diseases, Case Western Reserve University School of Medicine, Cleveland, OH, USA.
P A ZimmermanCenter for Global Health and Diseases, Case Western Reserve University School of Medicine, Cleveland, OH, USA.
Center for Global Health · USCase Western Reserve University · USUniversity School · US

Funding

West Virginia IDEA-CTRU54GM104942 · NIGMS · WEST VIRGINIA UNIVERSITY · PI Laura F. Gibson · 2012 to 2026
$81.0M
Proj. 4-The Genetic Variation of Innate Immune Genes w/Oral Manifestations of HIVP01DE019759 · NIDCR · CASE WESTERN RESERVE UNIVERSITY · PI ZIMMERMAN, PETER · 2009 to 2013
$9.0M
BIOMETRIC-GENETIC ANALYSIS OF CARDIOVASCULAR DISEASET32HL007567 · NHLBI · LOUISIANA STATE UNIV HSC NEW ORLEANS · PI ZHU, XIAOFENG · 1985 to 2021
$6.0M
CASE-PNG Infectious Disease Research Training ProgramD43TW007377 · FIC · CASE WESTERN RESERVE UNIVERSITY · PI KAZURA, JAMES WALTER, ZIMMERMAN, PETER A. · 2005 to 2015
$2.0M
FIC NIH HHS D43 TW007377FIC NIH HHS D43TW007377NHLBI NIH HHS T32 HL007567NHLBI NIH HHS T32HL007567NIDCR NIH HHS 1P01DE019759NIDCR NIH HHS P01 DE019759NIGMS NIH HHS U54 GM104942
6 · The paper itself

Abstract

Single-nucleotide polymorphisms (SNPs) in Toll-like receptor (TLR) genes TLR2-4 and TLR7-9, but not in TLR1 and TLR6, have been previously evaluated regarding human immunodeficiency virus (HIV) acquisition and disease progression in various populations, most of which were European. In this study, we examined associations between a total of 41 SNPs in 8 TLR genes (TLR1-4, TLR6-9) and HIV status in North American subjects (total n=276 (Caucasian, n=102; African American, n=150; other, n=24)). Stratification of the data by self-identified race revealed that a total of nine SNPs in TLR1, TLR4, TLR6 and TLR8 in Caucasians, and two other SNPs, one each in TLR4 and TLR8, in African Americans were significantly associated with HIV status at P<0.05. Concordant with the odds ratios of these SNPs, significant differences were observed in the SNP allele frequencies between HIV+ and HIV- subjects. Finally, in Caucasians, certain haplotypes of single (TLR1 and TLR4) and heterodimer (TLR2_TLR6) genes may be inferred as 'susceptible' or 'protective'. Our study provides in-depth insight into the associations between TLR variants, particularly TLR1 and TLR6, and HIV status in North Americans, and suggests that these associations may be race specific.

Indexed as

Polymorphism, Single NucleotideAllelesBlack or African AmericanFemaleGene FrequencyGenetic Predisposition to DiseaseGenotypeHaplotypesHIV InfectionsHumansLinkage DisequilibriumMaleRegression AnalysisToll-Like Receptor 1Toll-Like Receptor 4Toll-Like Receptor 6Toll-Like Receptor 1Toll-Like Receptor 4Toll-Like Receptor 6Toll-Like Receptor 8

Identifiers

PMID25253287
PMCPMC4257894
OpenAlexW2087085784

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.