ArticleMolecular genetics and genomics : MGG2015
Characterization of the 'Xiangshui' lemon transcriptome by de novo assembly to discover genes associated with self-incompatibility.
Article in Molecular genetics and genomics : MGG, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed, 42 citations in OpenAlex.
- Transposable elements cause the loss of self-incompatibility in citrus.Plant biotechnology journal · 2024Article
- The influence of the pollination compatibility type on the pistilFrontiers in genetics · 2024Article
- The origin and the genetic regulation of the self-compatibility mechanism in clementine (Frontiers in plant science · 2024Article
- The Pitaya Flower Tissue's Gene Differential Expression Analysis between Self-Incompatible and Self-Compatible Varieties for the Identification of Genes Involved in Self-Incompatibility Regulation.International journal of molecular sciences · 2023Article
- The Snapdragon Genomes Reveal the Evolutionary Dynamics of the S-Locus Supergene.Molecular biology and evolution · 2023Article
- Genome-Wide Analysis of theInternational journal of molecular sciences · 2022Article
- Combined transcriptomic and proteomic analysis reveals multiple pathways involved in self-pollen tube development and the potential roles of FviYABBY1 in self-incompatibility inFrontiers in plant science · 2022Article
- Downregulated expression of SHorticulture research · 2021Article
- Genomic insights into citrus domestication and its important agronomic traits.Plant communications · 2021Review
- Investigating the Mechanism of Unilateral Cross Incompatibility in Longan (Frontiers in plant science · 2021Article
- TMT-Based Quantitative Proteomic Analysis Reveals the Crucial Biological Pathways Involved in Self-Incompatibility Responses inInternational journal of molecular sciences · 2020Article
- Evolution of self-compatibility by a mutant SNature plants · 2020Article
- Transcriptome and phytohormone analysis reveals a comprehensive phytohormone and pathogen defence response in pear self-/cross-pollination.Plant cell reports · 2017Article
- Genome-wide identification and functional analysis of S-RNase involved in the self-incompatibility of citrus.Molecular genetics and genomics : MGG · 2017Article
- Transcriptome analysis reveals self-incompatibility in the tea plant (Camellia sinensis) might be under gametophytic control.BMC genomics · 2016Article
- Omics studies of citrus, grape and rosaceae fruit trees.Breeding science · 2016Review
- Transcriptomic comparison of the self-pollinated and cross-pollinated flowers of Erigeron breviscapus to analyze candidate self-incompatibility-associated genes.BMC plant biology · 2015Article
- CrWSKP1, an SKP1-like Gene, Is Involved in the Self-Incompatibility Reaction of "Wuzishatangju" (Citrus reticulata Blanco).International journal of molecular sciences · 2015Article
- Dissection of the style's response to pollination using transcriptome profiling in self-compatible (Solanum pimpinellifolium) and self-incompatible (Solanum chilense) tomato species.BMC plant biology · 2015Article
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Authors and funding
6 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Seedlessness is a desirable character in lemons and other citrus species. Seedless fruit can be induced in many ways, including through self-incompatibility (SI). SI is widely used as an intraspecific reproductive barrier that prevents self-fertilization in flowering plants. Although there have been many studies on SI, its mechanism remains unclear. The 'Xiangshui' lemon is an important seedless cultivar whose seedlessness has been caused by SI. It is essential to identify genes involved in SI in 'Xiangshui' lemon to clarify its molecular mechanism. In this study, candidate genes associated with SI were identified using high-throughput Illumina RNA sequencing (RNA-seq). A total of 61,224 unigenes were obtained (average, 948 bp; N50 of 1,457 bp), among which 47,260 unigenes were annotated by comparison to six public databases (Nr, Nt, Swiss-Prot, KEGG, COG, and GO). Differentially expressed genes were identified by comparing the transcriptomes of no-, self-, and cross-pollinated stigmas with styles of the 'Xiangshui' lemon. Several differentially expressed genes that might be associated with SI were identified, such as those involved in pollen tube growth, programmed cell death, signal transduction, and transcription. NADPH oxidase genes associated with apoptosis were highly upregulated in the self-pollinated transcriptome. The expression pattern of 12 genes was analyzed by quantitative real-time polymerase chain reaction. A putative S-RNase gene was identified that had not been previously associated with self-pollen rejection in lemon or citrus. This study provided a transcriptome dataset for further studies of SI and seedless lemon breeding.
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