Evidence map›Paper›PMID 25252651›Full record

ArticleReproduction (Cambridge, England)2014

Cross-species transcriptomic approach reveals genes in hamster implantation sites.

Wei Lei, Jennifer Herington, Cristi L Galindo, Tianbing Ding, Naoko Brown, Jeff Reese, Bibhash C Paria

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Reproduction (Cambridge, England), 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Wei LeiDivision of NeonatologyDepartment of PediatricsDivision of Cardiovascular MedicineDepartment of Obstetrics and GynecologyVanderbilt University Medical Center, Nashville, Tennessee 37232, USA.
Jennifer HeringtonDivision of NeonatologyDepartment of PediatricsDivision of Cardiovascular MedicineDepartment of Obstetrics and GynecologyVanderbilt University Medical Center, Nashville, Tennessee 37232, USA.
Cristi L GalindoDivision of NeonatologyDepartment of PediatricsDivision of Cardiovascular MedicineDepartment of Obstetrics and GynecologyVanderbilt University Medical Center, Nashville, Tennessee 37232, USA.
Tianbing DingDivision of NeonatologyDepartment of PediatricsDivision of Cardiovascular MedicineDepartment of Obstetrics and GynecologyVanderbilt University Medical Center, Nashville, Tennessee 37232, USA.
Naoko BrownDivision of NeonatologyDepartment of PediatricsDivision of Cardiovascular MedicineDepartment of Obstetrics and GynecologyVanderbilt University Medical Center, Nashville, Tennessee 37232, USA.
Jeff ReeseDivision of NeonatologyDepartment of PediatricsDivision of Cardiovascular MedicineDepartment of Obstetrics and GynecologyVanderbilt University Medical Center, Nashville, Tennessee 37232, USA.
Bibhash C PariaDivision of NeonatologyDepartment of PediatricsDivision of Cardiovascular MedicineDepartment of Obstetrics and GynecologyVanderbilt University Medical Center, Nashville, Tennessee 37232, USA bc.paria@vanderbilt.edu.
Near East School of Theology · LBCardiovascular Research Center · BRVanderbilt University Medical Center · US

Funding

Hamster: A Unique Model for Studying ImplantationR01HD044741 · NICHD · VANDERBILT UNIVERSITY · PI PARIA, BIBHASH CHANDRA · 2004 to 2014
$2.9M
Detecting biochemical changes in the pregnant mouse cervix by Raman spectroscopyR01HD081121 · NICHD · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MAHADEVAN-JANSEN, ANITA, REESE, JOHN JEFFREY · 2014 to 2018
$1.9M
The anti-fibrotic effects of neuregulin in the heartK01HL121045 · NHLBI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI GALINDO, CRISTI LARA · 2014 to 2018
$747k
NHLBI NIH HHS K01 HL121045NICHD NIH HHS HD044741NICHD NIH HHS R01 HD044741NICHD NIH HHS R01 HD081121
6 · The paper itself

Abstract

The mouse model has greatly contributed to understanding molecular mechanisms involved in the regulation of progesterone (P4) plus estrogen (E)-dependent blastocyst implantation process. However, little is known about contributory molecular mechanisms of the P4-only-dependent blastocyst implantation process that occurs in species such as hamsters, guineapigs, rabbits, pigs, rhesus monkeys, and perhaps humans. We used the hamster as a model of P4-only-dependent blastocyst implantation and carried out cross-species microarray (CSM) analyses to reveal differentially expressed genes at the blastocyst implantation site (BIS), in order to advance the understanding of molecular mechanisms of implantation. Upregulation of 112 genes and downregulation of 77 genes at the BIS were identified using a mouse microarray platform, while use of the human microarray revealed 62 up- and 38 down-regulated genes at the BIS. Excitingly, a sizable number of genes (30 up- and 11 down-regulated genes) were identified as a shared pool by both CSMs. Real-time RT-PCR and in situ hybridization validated the expression patterns of several up- and down-regulated genes identified by both CSMs at the hamster and mouse BIS to demonstrate the merit of CSM findings across species, in addition to revealing genes specific to hamsters. Functional annotation analysis found that genes involved in the spliceosome, proteasome, and ubiquination pathways are enriched at the hamster BIS, while genes associated with tight junction, SAPK/JNK signaling, and PPARα/RXRα signalings are repressed at the BIS. Overall, this study provides a pool of genes and evidence of their participation in up- and down-regulated cellular functions/pathways at the hamster BIS.

Indexed as

AnimalsCricetinaeDown-RegulationEmbryo ImplantationFemaleGenesHumansMaleMesocricetusMiceOligonucleotide Array Sequence AnalysisSpecies SpecificityTranscriptomeUp-Regulation

Identifiers

PMID25252651
PMCPMC4230993
OpenAlexW1990152553

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.