Evidence map›Paper›PMID 25251854›Full record

ReviewAnnual review of genetics2014

Transcription-associated mutagenesis.

Sue Jinks-Robertson, Ashok S Bhagwat

Abstract readReview
In one paragraph

Review in Annual review of genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 90 papers.

0numbers the graph read from it
0cells of the map it votes in
90citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

90 citing papers in PubMed.

  1. Article
  2. The aging genome exhibits organized vulnerability to somatic mutations.bioRxiv : the preprint server for biology · 2026
    Article
  3. Article
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  6. Article
  7. Article
  8. Nanorate sequencing reveals theProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. Article
  10. Article
  11. Article
  12. Emerging drivers of DNA repeat expansions.Biochemical Society transactions · 2025
    Review
  13. Article
  14. Mysteries of adenovirus packaging.Journal of virology · 2025
    Review
  15. Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article

30 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Sue Jinks-RobertsonDepartment of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, North Carolina 27710; email: sue.robertson@duke.edu.
Ashok S Bhagwat

Funding

REGULATION OF MITOTIC RECOMBINATION IN YEASTR01GM038464 · NIGMS · EMORY UNIVERSITY · PI JINKS-ROBERTSON, SUE · 1992 to 2015
$3.6M
TRANSCRIPTION--INDUCED MUTATIONSR01GM057200 · NIGMS · WAYNE STATE UNIVERSITY · PI BHAGWAT, ASHOK S · 1998 to 2014
$2.6M
Topoisomerase 1 and mutagenesis in yeastR01GM101690 · NIGMS · DUKE UNIVERSITY · PI JINKS-ROBERTSON, SUE · 2012 to 2015
$1.3M
Transcription-associated mutagenesis in yeastR01GM093197 · NIGMS · DUKE UNIVERSITY · PI JINKS-ROBERTSON, SUE · 2010 to 2013
$1.2M
Mapping and Visualizing Uracils Created by AID/APOBEC Enzymes using UdgXR21AI144708 · NIAID · WAYNE STATE UNIVERSITY · PI BHAGWAT, ASHOK S · 2019 to 2020
$398k
RECOMBINATION BETWEEN REPEATED SEQUENCE IN YEASTR29GM038464 · NIGMS · EMORY UNIVERSITY · PI JINKS-ROBERTSON, SUE · 1987 to 1991
–
NIAID NIH HHS R21 AI144708NIGMS NIH HHS GM038464NIGMS NIH HHS GM057200NIGMS NIH HHS GM093197NIGMS NIH HHS GM101690NIGMS NIH HHS R01 GM038464NIGMS NIH HHS R01 GM057200NIGMS NIH HHS R01 GM093197NIGMS NIH HHS R01 GM101690
6 · The paper itself

Abstract

Transcription requires unwinding complementary DNA strands, generating torsional stress, and sensitizing the exposed single strands to chemical reactions and endogenous damaging agents. In addition, transcription can occur concomitantly with the other major DNA metabolic processes (replication, repair, and recombination), creating opportunities for either cooperation or conflict. Genetic modifications associated with transcription are a global issue in the small genomes of microorganisms in which noncoding sequences are rare. Transcription likewise becomes significant when one considers that most of the human genome is transcriptionally active. In this review, we focus specifically on the mutagenic consequences of transcription. Mechanisms of transcription-associated mutagenesis in microorganisms are discussed, as is the role of transcription in somatic instability of the vertebrate immune system.

Indexed as

Transcription, GeneticBacteriaDNA DamageDNA ReplicationDNA, Single-StrandedHumansMutagenesisSaccharomycetalesDNA, Single-Strandedclass-switch recombinationcytosine deaminationDNA damagesomatic hypermutationtopoisomerase

Identifiers

PMID25251854
PMCPMC9464043

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.