Evidence map›Paper›PMID 25249769›Full record

ArticleGenetics and molecular biology2014

Transcriptional profile of fibroblasts obtained from the primary site, lymph node and bone marrow of breast cancer patients.

Paulo Roberto Del Valle, Cintia Milani, Maria Mitzi Brentani, Maria Lucia Hirata Katayama, Eduardo Carneiro de Lyra, Dirce Maria Carraro, Helena Brentani, Renato Puga, Leandro A Lima, Patricia Bortman Rozenchan and 3 more

Open access · goldAbstract read
In one paragraph

Article in Genetics and molecular biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
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  7. Cancer-Associated Fibroblasts in the Breast Tumor Microenvironment.Journal of mammary gland biology and neoplasia · 2021
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  11. Article
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  13. CircHECTD1 mediates pulmonary fibroblast activationTherapeutic advances in chronic disease · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Paulo Roberto Del ValleDepartamento de Radiologia e Oncologia , Faculdade de Medicina , Universidade de São Paulo , São Paulo, SP , Brazil .
Cintia MilaniDepartamento de Radiologia e Oncologia , Faculdade de Medicina , Universidade de São Paulo , São Paulo, SP , Brazil .
Maria Mitzi BrentaniDepartamento de Radiologia e Oncologia , Faculdade de Medicina , Universidade de São Paulo , São Paulo, SP , Brazil .
Maria Lucia Hirata KatayamaDepartamento de Radiologia e Oncologia , Faculdade de Medicina , Universidade de São Paulo , São Paulo, SP , Brazil .
Eduardo Carneiro de LyraInstituto Brasileiro do Controle do Câncer , São Paulo, SP , Brazil .
Dirce Maria CarraroCentro Internacional de Pesquisa e Ensino , Hospital A.C. Camargo , São Paulo, SP , Brazil .
Helena BrentaniDepartamento de Psiquiatria , Faculdade de Medicina , Universidade de São Paulo , São Paulo, SP , Brazil .
Renato PugaCentro Internacional de Pesquisa e Ensino , Hospital A.C. Camargo , São Paulo, SP , Brazil .
Leandro A LimaCentro Internacional de Pesquisa e Ensino , Hospital A.C. Camargo , São Paulo, SP , Brazil .
Patricia Bortman RozenchanDepartamento de Radiologia e Oncologia , Faculdade de Medicina , Universidade de São Paulo , São Paulo, SP , Brazil .
Bárbara Dos Santos NunesDepartamento de Radiologia e Oncologia , Faculdade de Medicina , Universidade de São Paulo , São Paulo, SP , Brazil .
João Carlos Guedes Sampaio GóesInstituto Brasileiro do Controle do Câncer , São Paulo, SP , Brazil .
Maria Aparecida Azevedo Koike FolgueiraDepartamento de Radiologia e Oncologia , Faculdade de Medicina , Universidade de São Paulo , São Paulo, SP , Brazil .
Universidade de São Paulo · BRAC Camargo Hospital · BRInstituto Brasileiro de Controle do Câncer · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cancer-associated fibroblasts (CAF) influence tumor development at primary as well as in metastatic sites, but there have been no direct comparisons of the transcriptional profiles of stromal cells from different tumor sites. In this study, we used customized cDNA microarrays to compare the gene expression profile of stromal cells from primary tumor (CAF, n = 4), lymph node metastasis (N+, n = 3) and bone marrow (BM, n = 4) obtained from breast cancer patients. Biological validation was done in another 16 samples by RT-qPCR. Differences between CAF vs N+, CAF vs BM and N+ vs BM were represented by 20, 235 and 245 genes, respectively (SAM test, FDR < 0.01). Functional analysis revealed that genes related to development and morphogenesis were overrepresented. In a biological validation set, NOTCH2 was confirmed to be more expressed in N+ (vs CAF) and ADCY2, HECTD1, HNMT, LOX, MACF1, SLC1A3 and USP16 more expressed in BM (vs CAF). Only small differences were observed in the transcriptional profiles of fibroblasts from the primary tumor and lymph node of breast cancer patients, whereas greater differences were observed between bone marrow stromal cells and the other two sites. These differences may reflect the activities of distinct differentiation programs.

Indexed as

bone marrowbreast neoplasmfibroblastgene expression profilinglymph nodemesenchymal stromal cellstumor microenvironment

Identifiers

PMID25249769
PMCPMC4171766
OpenAlexW2071309203

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.