Evidence map›Paper›PMID 25249633›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Dysregulation of gene expression as a cause of Cockayne syndrome neurological disease.

Yuming Wang, Probir Chakravarty, Michael Ranes, Gavin Kelly, Philip J Brooks, Edward Neilan, Aengus Stewart, Giampietro Schiavo, Jesper Q Svejstrup

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 109 citations in OpenAlex.

  1. Article
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  5. IncRNA-ZFAS1, an Emerging Gate-Keeper in DNA Damage-Dependent Transcriptional Regulation.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
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  6. Review
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  14. The ARK2N-CK2 complex initiates transcription-coupled repair through enhancing the interaction of CSB with lesion-stalled RNAPII.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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  17. Review
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  19. Elf1 promotes Rad26's interaction with lesion-arrested Pol II for transcription-coupled repair.Proceedings of the National Academy of Sciences of the United States of America · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Yuming WangMechanisms of Transcription Laboratory, Cancer Research UK London Research Institute, South Mimms EN6 3LD, United Kingdom;
Probir ChakravartyBioinformatics and Biostatistics Group, Cancer Research UK London Research Institute, London WC2A 3LY, United Kingdom;
Michael RanesMechanisms of Transcription Laboratory, Cancer Research UK London Research Institute, South Mimms EN6 3LD, United Kingdom;
Gavin KellyBioinformatics and Biostatistics Group, Cancer Research UK London Research Institute, London WC2A 3LY, United Kingdom;
Philip J BrooksLaboratory of Neurogenetics, National Institute on Alcohol Abuse and Alcoholism and Office of Rare Diseases Research, National Center for Advancing Translational Sciences, National Institutes of Health, Bethesda, MD 20892;
Edward NeilanGenetics and Metabolism, Boston Children's Hospital, Harvard Medical School, Boston, MA 02115; and.
Aengus StewartBioinformatics and Biostatistics Group, Cancer Research UK London Research Institute, London WC2A 3LY, United Kingdom;
Giampietro SchiavoSobell Department of Motor Neuroscience and Movement Disorders, Institute of Neurology, University College London, London WC1N 3BG, United Kingdom.
Jesper Q SvejstrupMechanisms of Transcription Laboratory, Cancer Research UK London Research Institute, South Mimms EN6 3LD, United Kingdom; jesper.svejstrup@cancer.org.uk.
Cancer Research UK · GBHarvard University · USNational Institutes of Health · USUniversity College London · GB

Funding

Cancer Research UK 11567
6 · The paper itself

Abstract

Cockayne syndrome (CS) is a multisystem disorder with severe neurological symptoms. The majority of CS patients carry mutations in Cockayne syndrome group B (CSB), best known for its role in transcription-coupled nucleotide excision repair. Indeed, because various repair pathways are compromised in patient cells, CS is widely considered a genome instability syndrome. Here, we investigate the connection between the neuropathology of CS and dysregulation of gene expression. Transcriptome analysis of human fibroblasts revealed that even in the absence of DNA damage, CSB affects the expression of thousands of genes, many of which are neuronal genes. CSB is present in a significant subset of these genes, suggesting that regulation is direct, at the level of transcription. Importantly, reprogramming of CS fibroblasts to neuron-like cells is defective unless an exogenous CSB gene is introduced. Moreover, neuroblastoma cells from which CSB is depleted show defects in gene expression programs required for neuronal differentiation, and fail to differentiate and extend neurites. Likewise, neuron-like cells cannot be maintained without CSB. Finally, a number of disease symptoms may be explained by marked gene expression changes in the brain of patients with CS. Together, these data point to dysregulation of gene regulatory networks as a cause of the neurological symptoms in CS.

Indexed as

Gene Expression ProfilingGene Expression RegulationAnimalsBlotting, WesternCell LineCell Line, TumorCells, CulturedCell TransdifferentiationCockayne SyndromeDNA HelicasesDNA Repair EnzymesFibroblastsGene OntologyGene Regulatory NetworksHEK293 CellsHumansDNA HelicasesDNA Repair EnzymesERCC6 protein, humanPoly-ADP-Ribose Binding ProteinsCSAgene regulationneuritogenesisneurologyreprogramming

Identifiers

PMID25249633
PMCPMC4210037
OpenAlexW2015967593

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.