Evidence map›Paper›PMID 25248338›Full record

ArticleImmunogenetics2014

The role of TLR9 polymorphism in susceptibility to pulmonary tuberculosis.

Deepak Bharti, Ashish Kumar, Ranjeet Singh Mahla, Sushil Kumar, Harshad Ingle, Hari Shankar, Beenu Joshi, Ashwin Ashok Raut, Himanshu Kumar

Abstract read
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In one paragraph

Article in Immunogenetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 4 pooled it
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 4 syntheses or guidelines pooled it, 62 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
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  4. Association of polymorphisms in Toll-like receptors 4 and 9 with risk of pulmonary tuberculosis: a meta-analysis.Medical science monitor : international medical journal of experimental and clinical research · 2015
    Pooled it
  5. Impact ofBiomolecules & biomedicine · 2024
    Article
  6. Activation of host nucleic acid sensors byCritical reviews in microbiology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Deepak BhartiLaboratory of Immunology, Department of Biological Sciences, Indian Institute of Science Education and Research (IISER), Indore-Bypass Road, Bhauri, Bhopal, 460023, Madhya Pradesh, India.
Ashish Kumar
Ranjeet Singh Mahla
Sushil Kumar
Harshad Ingle
Hari Shankar
Beenu Joshi
Ashwin Ashok Raut
Himanshu Kumar
Indian Institute of Science Education and Research, Bhopal · INNational JALMA Institute for Leprosy & Other Mycobacterial Diseases · INNational Institute of High Security Animal Diseases · INOsaka University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mycobacterium tuberculosis (MTB) is the causative agent of pulmonary tuberculosis (PTB), a major health problem that leads to 1.5 million deaths annually. Host genetic factors play a significant role in disease resistance/susceptibility by altering immunity against MTB. Toll-like receptor (TLR) sensors such as TLR2, TLR4, TLR8, and TLR9 are known to play a pivotal role in PTB via modulating sensor expression and/or effector responses. Single-nucleotide polymorphism (SNP) rs187084 (T-1486C) of the TLR9 promoter is associated with various autoimmune disorders and cancers. A recent bioinformatic analysis predicted that the T-1486C SNP is involved in PTB, although its potential role is unclear. To investigate the role of T-1486C in PTB, we stimulated PBMCs with the H37Rv whole cell lysate. We found that the presence of the "C" allele increases the transcriptional activity of the TLR9, which in turn induces high levels of Interferon gamma-induced protein 10 (IP-10), a biomarker for PTB. However, the expression of protective cytokines such as IFNγ and TNFα was observed significantly less with "C" allele in comparison to "T" allele. We further selected three different tribe populations showing differential susceptibility to PTB and performed genotypic analyses for the TLR9 promoter. We found a significantly lower minor allele frequency (MAF) of T-1486C in the Baiga tribe, wherein fewer PTB cases were reported, than that in the Gond and Korku tribes. Collectively, these data suggest that the minor "C" allele at rs187084 locus may be associated with susceptibility to PTB, which may explain the relatively lower PTB rates observed in Baiga tribe members.

Indexed as

Genetic Predisposition to DiseaseMycobacterium tuberculosisPolymorphism, GeneticAllelesChemokine CXCL10CytokinesGene FrequencyGenotypeHumansPolymorphism, Single NucleotideProtein BiosynthesisToll-Like Receptor 9Transcription, GeneticTuberculosis, PulmonaryChemokine CXCL10CXCL10 protein, humanCytokinesToll-Like Receptor 9

Identifiers

PMID25248338
OpenAlexW2006120801

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.