Evidence map›Paper›PMID 25247923›Full record

ArticlePloS one2014

Loss of the thioredoxin reductase Trr1 suppresses the genomic instability of peroxiredoxin tsa1 mutants.

Sandrine Ragu, Michèle Dardalhon, Sushma Sharma, Ismail Iraqui, Géraldine Buhagiar-Labarchède, Virginie Grondin, Guy Kienda, Laurence Vernis, Roland Chanet, Richard D Kolodner and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.7field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

  1. Trace elements and metal nanoparticles: mechanistic approaches to mitigating chemotherapy-induced toxicity-a review of literature evidence.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 3 countries.

Sandrine RaguCentre National de la Recherche Scientifique, UMR3348, Orsay, France; Institut Curie, Centre de Recherche, Orsay, France.
Michèle DardalhonCentre National de la Recherche Scientifique, UMR3348, Orsay, France; Institut Curie, Centre de Recherche, Orsay, France.
Sushma SharmaDepartment of Medical Biochemistry and Biophysics, Umea University, Umea, Sweden.
Ismail IraquiCentre National de la Recherche Scientifique, UMR3348, Orsay, France; Institut Curie, Centre de Recherche, Orsay, France.
Géraldine Buhagiar-LabarchèdeCentre National de la Recherche Scientifique, UMR3348, Orsay, France; Institut Curie, Centre de Recherche, Orsay, France.
Virginie GrondinCentre National de la Recherche Scientifique, UMR3348, Orsay, France; Institut Curie, Centre de Recherche, Orsay, France.
Guy KiendaCentre National de la Recherche Scientifique, UMR3348, Orsay, France; Institut Curie, Centre de Recherche, Orsay, France.
Laurence VernisCentre National de la Recherche Scientifique, UMR3348, Orsay, France; Institut Curie, Centre de Recherche, Orsay, France.
Roland ChanetCentre National de la Recherche Scientifique, UMR3348, Orsay, France; Institut Curie, Centre de Recherche, Orsay, France.
Richard D KolodnerLudwig Institute for Cancer Research, University of California School of Medicine San Diego, La Jolla, California, United States of America.
Meng-Er HuangCentre National de la Recherche Scientifique, UMR3348, Orsay, France; Institut Curie, Centre de Recherche, Orsay, France.
Gérard FayeCentre National de la Recherche Scientifique, UMR3348, Orsay, France; Institut Curie, Centre de Recherche, Orsay, France.
Centre National de la Recherche Scientifique · FRInstitut Curie · FRLudwig Cancer Research · USUmeå University · SE

Funding

ENZYMATIC MECHANISMS OF GENETIC RECOMBINATIONR01GM026017 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Richard D Kolodner · 1985 to 2026
$10.5M
ENZYMATIC MECHANISMS OF GENETIC RECOMBINATIONR37GM026017 · NIGMS · UNIVERSITY OF CALIFORNIA SAN DIEGO · PI KOLODNER, RICHARD D · 1992 to 2001
$759k
NIGMS NIH HHS R01 GM026017NIGMS NIH HHS R37 GM026017
6 · The paper itself

Abstract

The absence of Tsa1, a key peroxiredoxin that scavenges H2O2 in Saccharomyces cerevisiae, causes the accumulation of a broad spectrum of mutations. Deletion of TSA1 also causes synthetic lethality in combination with mutations in RAD51 or several key genes involved in DNA double-strand break repair. In the present study, we propose that the accumulation of reactive oxygen species (ROS) is the primary cause of genome instability of tsa1Δ cells. In searching for spontaneous suppressors of synthetic lethality of tsa1Δ rad51Δ double mutants, we identified that the loss of thioredoxin reductase Trr1 rescues their viability. The trr1Δ mutant displayed a Can(R) mutation rate 5-fold lower than wild-type cells. Additional deletion of TRR1 in tsa1Δ mutant reduced substantially the Can(R) mutation rate of tsa1Δ strain (33-fold), and to a lesser extent, of rad51Δ strain (4-fold). Loss of Trr1 induced Yap1 nuclear accumulation and over-expression of a set of Yap1-regulated oxido-reductases with antioxidant properties that ultimately re-equilibrate intracellular redox environment, reducing substantially ROS-associated DNA damages. This trr1Δ -induced effect was largely thioredoxin-dependent, probably mediated by oxidized forms of thioredoxins, the primary substrates of Trr1. Thioredoxin Trx1 and Trx2 were constitutively and strongly oxidized in the absence of Trr1. In trx1Δ trx2Δ cells, Yap1 was only moderately activated; consistently, the trx1Δ trx2Δ double deletion failed to efficiently rescue the viability of tsa1Δ rad51Δ. Finally, we showed that modulation of the dNTP pool size also influences the formation of spontaneous mutation in trr1Δ and trx1Δ trx2Δ strains. We present a tentative model that helps to estimate the respective impact of ROS level and dNTP concentration in the generation of spontaneous mutations.

Indexed as

Genomic InstabilityMutationDNA DamageDNA RepairPeroxidasesRad51 RecombinaseReactive Oxygen SpeciesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsThioredoxin Reductase 1Transcription FactorsPeroxidasesRAD51 protein, S cerevisiaeRad51 RecombinaseReactive Oxygen SpeciesSaccharomyces cerevisiae ProteinsThioredoxin Reductase 1Transcription FactorsTsa1 protein, S cerevisiaeYAP1 protein, S cerevisiae

Identifiers

PMID25247923
PMCPMC4172583
OpenAlexW2048649420

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.