Evidence map›Paper›PMID 25246594›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

FBH1 affects warm temperature responses in the Arabidopsis circadian clock.

Dawn H Nagel, Jose L Pruneda-Paz, Steve A Kay

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
5.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. The interplay between the circadian clock and abiotic stress responses mediated by ABF3 and CCA1/LHY.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  8. The Roles of Circadian Clock Genes in Plant Temperature Stress Responses.International journal of molecular sciences · 2024
    Review
  9. Article
  10. Review
  11. Review
  12. Clock-Controlled and Cold-InducedFrontiers in plant science · 2022
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Dawn H NagelMolecular and Computational Biology Section, University of Southern California, Los Angeles, CA 90089; and.
Jose L Pruneda-PazSection of Cell and Developmental Biology, Division of Biological Sciences, University of California, San Diego, La Jolla, CA 92093.
Steve A KayMolecular and Computational Biology Section, University of Southern California, Los Angeles, CA 90089; and stevekay@usc.edu.
University of Southern California · USUniversity of California, San Diego · US

Funding

GENETIC ANALYSIS OF CIRCADIAN RHYTHMS IN ARABIDOPSISR01GM056006 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI KAY, STEVE A, PRUNEDA-PAZ, JOSE L · 1996 to 2016
$6.0M
Molecular Mechanisms in the Arabidopsis Circadian ClockR01GM067837 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI KAY, STEVE A · 2003 to 2015
$4.7M
The Arabidopsis Transcription Factor ORFeome and downstream genomic applicationRC2GM092412 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ECKER, JOSEPH R, KAY, STEVE A · 2009 to 2010
$2.0M
A Functional Genomics Approach to Identify Regulators of Arabidopsis Clock GenesF32GM090375 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI NAGEL, DAWN H · 2010 to 2012
$153k
NIGMS NIH HHS F32 GM090375NIGMS NIH HHS F32GM090375NIGMS NIH HHS R01 GM056006NIGMS NIH HHS R01GM056006NIGMS NIH HHS R01 GM067837NIGMS NIH HHS R01GM067837NIGMS NIH HHS RC2 GM092412NIGMS NIH HHS RC2GM092412
6 · The paper itself

Abstract

In Arabidopsis, the circadian clock allows the plant to coordinate daily external signals with internal processes, conferring enhanced fitness and growth vigor. Although external cues such as temperature can entrain the clock, an important feature of the clock is the ability to maintain a relatively constant period over a range of physiological temperatures; this ability is referred to as "temperature compensation." However, how temperature actually is perceived and integrated into the clock molecular circuitry remains largely unknown. In an effort to identify additional regulators of the circadian clock, including putative components that could modulate the clock response to changes in environmental signals, we identified in a previous large-scale screen a transcription factor that interacts with and regulates the promoter activity of a core clock gene. In this report, we characterized this transcription factor, flowering basic helix-loop-helix 1 (FBH1) that binds in vivo to the promoter of the key clock gene circadian clock-associated 1 (CCA1) and regulates its expression. We found that upon temperature changes, overexpression of FBH1 alters the pace of CCA1 expression by causing a period shortening and thus preventing the clock from buffering against this change in temperature. Furthermore, as is consistent with the current mechanistic model of feedback loops observed in the clock regulatory network, we also determined that CCA1 binds in vivo to the FBH1 promoter and regulates its expression. Together these results establish a role for FBH1 as a transcriptional modulator of warm temperature signals and clock responses in Arabidopsis.

Indexed as

Gene Expression Regulation, PlantTemperatureAdaptation, PhysiologicalArabidopsisArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsCircadian ClocksFeedback, PhysiologicalGenotypePlants, Genetically ModifiedPromoter Regions, GeneticProtein BindingReverse Transcriptase Polymerase Chain ReactionTranscription FactorsArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsCCA1 protein, ArabidopsisFBH1 protein, ArabidopsisTranscription Factors

Identifiers

PMID25246594
PMCPMC4210019
OpenAlexW1991460197

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.