Evidence map›Paper›PMID 25246478›Full record

ArticleJournal of bacteriology2014

Investigation of the essentiality of glutamate racemase in Mycobacterium smegmatis.

Yang Li, Roman Mortuza, Daniel L Milligan, Sieu L Tran, Ulrich Strych, Gregory M Cook, Kurt L Krause

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.4field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. d-glutamate and Gut Microbiota in Alzheimer's Disease.International journal of molecular sciences · 2020
    Review
  4. Construction and Use of TransposonFrontiers in microbiology · 2019
    Article
  5. Article
  6. Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Yang LiDepartment of Biochemistry, Otago School of Medical Sciences, University of Otago, Dunedin, New Zealand.
Roman MortuzaDepartment of Biochemistry, Otago School of Medical Sciences, University of Otago, Dunedin, New Zealand.
Daniel L MilliganDepartment of Biochemistry, Otago School of Medical Sciences, University of Otago, Dunedin, New Zealand.
Sieu L TranDepartment of Microbiology and Immunology, Otago School of Medical Sciences, University of Otago, Dunedin, New Zealand.
Ulrich StrychBaylor College of Medicine, Section of Pediatric Tropical Medicine, Houston, Texas, USA.
Gregory M CookDepartment of Microbiology and Immunology, Otago School of Medical Sciences, University of Otago, Dunedin, New Zealand.
Kurt L KrauseDepartment of Biochemistry, Otago School of Medical Sciences, University of Otago, Dunedin, New Zealand kurt.krause@otago.ac.nz.
University of Otago · NZBaylor College of Medicine · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mycobacterial cell wall frequently has been used as a target for drug development, and d-glutamate, synthesized by glutamate racemase (MurI), is an important component of peptidoglycan. While the essentiality of the murI gene has been shown in several bacterial species, including Escherichia coli, Bacillus anthracis, and Streptococcus pneumoniae, studies in mycobacteria have not yet provided definitive results. This study aimed to determine whether murI is indeed essential and can serve as a possible target for structure-aided drug design. We have achieved this goal by creating a ΔmurI strain of Mycobacterium smegmatis, a close relative of Mycobacterium tuberculosis. The deletion of the murI gene in M. smegmatis could be achieved only in minimal medium supplemented with D-glutamate, demonstrating that MurI is essential for growth and that glutamate racemase is the only source of D-glutamate for peptidoglycan synthesis in M. smegmatis.

Indexed as

Genes, EssentialAmino Acid IsomerasesCell WallCulture MediaGene DeletionGlutamic AcidMycobacterium smegmatisPeptidoglycanAmino Acid IsomerasesCulture Mediaglutamate racemaseGlutamic AcidPeptidoglycan

Identifiers

PMID25246478
PMCPMC4248854
OpenAlexW2086426041

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.