Evidence map›Paper›PMID 25246406›Full record

ArticleAntimicrobial agents and chemotherapy2014

An in vitro deletion in ribE encoding lumazine synthase contributes to nitrofurantoin resistance in Escherichia coli.

Jascha Vervoort, Basil Britto Xavier, Andrew Stewardson, Samuel Coenen, Maciek Godycki-Cwirko, Niels Adriaenssens, Anna Kowalczyk, Christine Lammens, Stephan Harbarth, Herman Goossens and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it, 47 citations in OpenAlex.

  1. Pooled it
  2. Poultry-associated nitrofurantoin-resistant and pre-resistantOne health (Amsterdam, Netherlands) · 2025
    Article
  3. Article
  4. Article
  5. Unlocking Nitrofurantoin: Understanding Molecular Mechanisms of Action and Resistance in Enterobacterales.Medical principles and practice : international journal of the Kuwait University, Health Science Centre · 2025
    Review
  6. Article
  7. Article
  8. Review
  9. UropathogenicMicroorganisms · 2023
    Review
  10. Review
  11. Article
  12. Roseoflavin, a Natural Riboflavin Analogue, PossessesAntimicrobial agents and chemotherapy · 2022
    Article
  13. Molecular Insight intoPharmaceuticals (Basel, Switzerland) · 2022
    Article
  14. Alterations in chromosomal genesMicrobial genomics · 2021
    Article
  15. Review
  16. Article
  17. Review
  18. Article
  19. Article
  20. Novel 5-Nitrofuran-Activating Reductase in Escherichia coli.Antimicrobial agents and chemotherapy · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 4 countries.

Jascha VervoortDepartment of Medical Microbiology, University of Antwerp, Antwerp, Belgium Vaccine and Infectious Disease Institute, University of Antwerp, Antwerp, Belgium.
Basil Britto XavierDepartment of Medical Microbiology, University of Antwerp, Antwerp, Belgium Vaccine and Infectious Disease Institute, University of Antwerp, Antwerp, Belgium.
Andrew StewardsonInfection Control Program, University of Geneva Hospitals and Faculty of Medicine, Geneva, Switzerland Department of Medicine, University of Melbourne, Melbourne, Victoria, Australia.
Samuel CoenenDepartment of Medical Microbiology, University of Antwerp, Antwerp, Belgium Vaccine and Infectious Disease Institute, University of Antwerp, Antwerp, Belgium.
Maciek Godycki-CwirkoCentre for Family and Community Medicine, Medical University of Lodz, Lodz, Poland.
Niels AdriaenssensDepartment of Medical Microbiology, University of Antwerp, Antwerp, Belgium Vaccine and Infectious Disease Institute, University of Antwerp, Antwerp, Belgium.
Anna KowalczykCentre for Family and Community Medicine, Medical University of Lodz, Lodz, Poland.
Christine LammensDepartment of Medical Microbiology, University of Antwerp, Antwerp, Belgium Vaccine and Infectious Disease Institute, University of Antwerp, Antwerp, Belgium.
Stephan HarbarthInfection Control Program, University of Geneva Hospitals and Faculty of Medicine, Geneva, Switzerland.
Herman GoossensDepartment of Medical Microbiology, University of Antwerp, Antwerp, Belgium Vaccine and Infectious Disease Institute, University of Antwerp, Antwerp, Belgium.
Surbhi Malhotra-KumarDepartment of Medical Microbiology, University of Antwerp, Antwerp, Belgium Vaccine and Infectious Disease Institute, University of Antwerp, Antwerp, Belgium surbhi.malhotra@uantwerpen.be.
University of Antwerp · BEMedical University of Lodz · PLUniversity of Geneva · CHUniversity of Melbourne · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nitrofurantoin has been used for decades for the treatment of urinary tract infections (UTIs), but clinically significant resistance in Escherichia coli is uncommon. Nitrofurantoin concentrations in the gastrointestinal tract tend to be low, which might facilitate selection of nitrofurantoin-resistant (NIT-R) strains in the gut flora. We subjected two nitrofurantoin-susceptible intestinal E. coli strains (ST540-p and ST2747-p) to increasing nitrofurantoin concentrations under aerobic and anaerobic conditions. Whole-genome sequencing was performed for both susceptible isolates and selected mutants that exhibited the highest nitrofurantoin resistance levels aerobically (ST540-a and ST2747-a) and anaerobically (ST540-an and ST2747-an). ST540-a/ST540-an and ST2747-a (aerobic MICs of >64 μg/ml) harbored mutations in the known nitrofurantoin resistance determinants nfsA and/or nfsB, which encode oxygen-insensitive nitroreductases. ST2747-an showed reduced nitrofurantoin susceptibility (aerobic MIC of 32 μg/ml) and exhibited remarkable growth deficits but did not harbor nfsA/nfsB mutations. We identified a 12-nucleotide deletion in ribE, encoding lumazine synthase, an essential enzyme involved in the biosynthesis of flavin mononucleotide (FMN), which is an important cofactor for NfsA and NfsB. Complementing ST2747-an with a functional wild-type lumazine synthase restored nitrofurantoin susceptibility. Six NIT-R E. coli isolates (NRCI-1 to NRCI-6) from stools of UTI patients treated with nitrofurantoin, cefuroxime, or a fluoroquinolone harbored mutations in nfsA and/or nfsB but not ribE. Sequencing of the ribE gene in six intestinal and three urinary E. coli strains showing reduced nitrofurantoin susceptibility (MICs of 16 to 48 μg/ml) also did not identify any relevant mutations. NRCI-1, NRCI-2, and NRCI-5 exhibited up to 4-fold higher anaerobic MICs, compared to the mutants generated in vitro, presumably because of additional mutations in oxygen-sensitive nitroreductases.

Indexed as

Base SequenceSequence DeletionAerobiosisAnaerobiosisAnti-Bacterial AgentsCefuroximeDrug Resistance, BacterialEscherichia coliEscherichia coli InfectionsEscherichia coli ProteinsFluoroquinolonesGenetic Complementation TestHumansMicrobial Sensitivity TestsMolecular Sequence DataMultienzyme Complexes6,7-dimethyl-8-ribityllumazine synthaseAnti-Bacterial AgentsCefuroximeEscherichia coli ProteinsFluoroquinolonesMultienzyme ComplexesNfsA protein, E coliNfsB protein, E coliNitrofurantoinNitroreductasesRiboflavin Synthase

Identifiers

PMID25246406
PMCPMC4249564
OpenAlexW2162091267

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.